Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g2446 ATGTCTACACCTTTGGAACATGATTACATAGGCTTAACAGAGAAGAAGAAGATACCTTCATCATCATCTTCTTCTTCTTCTTCTGAAGATGGAAAGACCTTCAAGGAGACTGAGTTAAGGCTTGGCCTACCAGGTTCTGAGTCTCCAGAGAGAAAACCACTTTCTGGGGTCTCTCTCTCTCTATTTGGGAACCTCAATAACAACAACAATGTCATGAACCACCATGTCCATGTGGCTGGTGCTAAGAGAGGCTTTTCTGATGCCATTGATGCTAAATGGGCTTTCTCTGATGCTCATGGATCTGACTCTGACTTGGGAAAACCTTCTGCTTTGTTTTCACCAAGAGGATCAGGGAATGTTGTTGGAAAGCCTCCATTGGACCCCAAAACCATTAGCACCCAGCAAGGAAATTCCATTAACACCCCTGCTTCTGCTTCACAAGCCATCAAAGAATCCAAGCCTCTTCAGGAAAAGAACCCTCAACTTCCTGCTACTAATGAACATGCTAGTGCTCCTGCTTCTAAGGCACAGGTTGTGGGGTGGCCACCAATTCGATCGTTTCGAAAGAACACCATGGCCTCTAATTTGACAAAGAACAATGATGAAGCTGAAGGGAAACCGGGATTTGGTTGTTTGTATGTGAAGGTAAGCATGGATGGTGCTCCTTATCTAAGAAAGGTTGATCTCAAAACCTACAGCAACTATAAGGAACTTTCTTCAGCTCTTGAGAAGATGTTTAGCTGCTTCACCATTGGTCAGTGCAACTCTCCTGGGCTGCCTGGAAAAGATGGATTAAGTGAGAGCTCTTTGAGGGATCTTCTCCATGGCTCTGAATATGTTCTTACTTATGAAGACAAGGATGGAGATTGGATGCTTGTGGGAGATGTTCCTTGGGAGATGTTCACTGACTCATGCAGGAGACTGAGGATCATGAAAGGGTCTGAGGCAATTGGACTAGCTCCAAGAGCAGTGGAAAAATCAAAGAGCCAAAACTAG 996 0.4458 MSTPLEHDYIGLTEKKKIPSSSSSSSSSEDGKTFKETELRLGLPGSESPERKPLSGVSLSLFGNLNNNNNVMNHHVHVAGAKRGFSDAIDAKWAFSDAHGSDSDLGKPSALFSPRGSGNVVGKPPLDPKTISTQQGNSINTPASASQAIKESKPLQEKNPQLPATNEHASAPASKAQVVGWPPIRSFRKNTMASNLTKNNDEAEGKPGFGCLYVKVSMDGAPYLRKVDLKTYSNYKELSSALEKMFSCFTIGQCNSPGLPGKDGLSESSLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKGSEAIGLAPRAVEKSKSQN* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g2446 331 MobiDBLite consensus disorder prediction 128 172 - -
Amo07g2446 331 SUPERFAMILY CAD & PB1 domains 211 312 - -
Amo07g2446 331 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 5 323 IPR003311 GO:0005634|GO:0006355
Amo07g2446 331 MobiDBLite consensus disorder prediction 98 176 - -
Amo07g2446 331 Gene3D - 208 325 - -
Amo07g2446 331 MobiDBLite consensus disorder prediction 1 54 - -
Amo07g2446 331 ProSiteProfiles PB1 domain profile. 211 313 IPR000270 GO:0005515
Amo07g2446 331 PANTHER AUXIN-RESPONSIVE PROTEIN 5 323 - -
Amo07g2446 331 MobiDBLite consensus disorder prediction 16 30 - -
Amo07g2446 331 Pfam AUX/IAA family 36 322 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g2446 Amo-Chr7 71398221 71400463 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g2446 213 316 B3 DNA Binding Superfamily AT1G19850 33.962 2.22e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Amo07g2446 AUX_IAA 1.2e-92 CL0072