Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g2426 ATGTCTACACCTTTGGAACATGATTACATAGGCTTAACAGAGAAGAAGAAGATACCTTCATCATCATCTTCTTCTTCTTCTGAAGATGGAAAGACCTTCAAGGAGACTGAGTTAAGGCTTGGCCTACCAGGTTCTGAGTCTCCAGAGAGAAAACCACTTTCTGGGGTCTCTCTCTCTCTATTTGGGAACCTCAATAACAACAACAATGTCATGAACCACCATGTCCATGTGGCTGGTGCTAAGAGAGGCTTTTCTGATGCCATTGATGCTAAATGGGCTTTCTCTGATGCTCATGGATCTGACTCTGACTTGGGAAAACCTTCTGCTTTGTTTTCACCAAGAGGATCAGGGAATGTTGTTGGAAAGCCTCCATTGGACCCCAAAACCATTAGCACCCAGCAAGGAAATTCCATTAACACCCCTGCTTCTGCTTCACAAGCCATCAAAGAATCCAAGCCTCTTCAGGAAAAGAACCCTCAACTTCCTGCTACTAATGAACATGCTAGTGCTCCTGCTTCTAAGGCACAGGTTGTGGGGTGGCCACCAATTCGATCGTTTCGAAAGAACACCATGGCCTCTAATTTGACAAAGAACAATGATGAAGCTGAAGGGAAACCGGGATTTGGTTGTTTGTATGTGAAGGTAAGCATGGATGGTGCTCCTTATCTAAGAAAGGTTGATCTCAAAACCTACAGCAACTATAAGGAACTTTCTTCAGCTCTTGAGAAGATGTTTAGCTGCTTCACCATTGGTCAGTGCAACTCTCCTGGGCTGCCTGGAAAAGATGGATTAAGTGAGAGCTCTTTGAGGGATCTTCTCCATGGCTCTGAATATGTTCTTACTTATGAAGACAAGGATGGAGATTGGATGCTTGTGGGAGATGTTCCTTGGGAGATGTTCACTGACTCGTGCAGGAGACTGAGGATCATGAAAGGGTCTGAGGCAATTGGACTAGCTCCAAGAGCAGTGGAAAAGTCAAAGAGCCAAAACTAG 993 0.4481 MSTPLEHDYIGLTEKKKIPSSSSSSSSEDGKTFKETELRLGLPGSESPERKPLSGVSLSLFGNLNNNNNVMNHHVHVAGAKRGFSDAIDAKWAFSDAHGSDSDLGKPSALFSPRGSGNVVGKPPLDPKTISTQQGNSINTPASASQAIKESKPLQEKNPQLPATNEHASAPASKAQVVGWPPIRSFRKNTMASNLTKNNDEAEGKPGFGCLYVKVSMDGAPYLRKVDLKTYSNYKELSSALEKMFSCFTIGQCNSPGLPGKDGLSESSLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKGSEAIGLAPRAVEKSKSQN* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g2426 330 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 5 322 IPR003311 GO:0005634|GO:0006355
Amo07g2426 330 MobiDBLite consensus disorder prediction 97 175 - -
Amo07g2426 330 PANTHER AUXIN-RESPONSIVE PROTEIN 5 322 - -
Amo07g2426 330 SUPERFAMILY CAD & PB1 domains 210 311 - -
Amo07g2426 330 ProSiteProfiles PB1 domain profile. 210 312 IPR000270 GO:0005515
Amo07g2426 330 MobiDBLite consensus disorder prediction 1 53 - -
Amo07g2426 330 MobiDBLite consensus disorder prediction 127 171 - -
Amo07g2426 330 Pfam AUX/IAA family 35 321 IPR033389 -
Amo07g2426 330 Gene3D - 207 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g2426 Amo-Chr7 71248352 71250752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g2426 212 315 B3 DNA Binding Superfamily AT1G19850 33.962 2.30e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Amo07g2426 AUX_IAA 1.2e-92 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g2426 K14484 - gmx:100804423 418.313