Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g2401 ATGGTTGCCGCCGGCGAACCCATGAAGAAGAAAGCGAAGCAAAACCTACTGAACCCCAATTGGGTTCAACTCCAACGAAAGCTAAAGCTCAATAATAAGTCTTCAAGGACCTACAAAGAAGAAGACACCCCAAAATCAATACTGGGGAAACGTAAAGAGAGCCCGAATGATGAATCCGATGACTCTCAGATTGATCCTCTTATTCCTGTAAATGACGACTCAAGTCTGACAGATGCAGTCGCCATAGATTGTGAAATGGTTGGCGTTGGTCAAGGAAACAAAAGTGCATTGGGAAGAGTAACAATGGTTAATAAGTGGGGAAATGTTCTTTATGACGAGTTTGTTCGGCCAGTAGAACGGGTTGTTGACTTCCGTACTAAAATTAGTGGCATAAGACCTCGAGATTTGAAAAAAGCAATTGACTTTTGGACTGCTCAGAAGAAAGTTGCAGAGTTGATGAAAGGAAGGATCCTTGTTGGTCATGCCTTGCAGAATGATCTTAAGGCGTTGTTATTAAGTCATCCGAAAAAGGACATTCGAGATACCTCCGAGTACCAGCCATTTCTAAAGTCAGGTTGTAGAAGAGCGCTGCGGCATCTTGCTGCAGAAATTCTTGGTGCCGAGATCCAATCAGGAGAGCACTGCCCTATACAAGATGCTCGTGCTGCTATGCTGCTTTACCAAAGAAATAGAAAAGAGTGGGAAAGGAGCTTAAGAGATCAGTTTAGGCTCAAAAAGAAGCAAAATAAACGGAAGAATAAAAAGAAACCAAAGAATGAAGATACTTCAAATGCCAACCATGCTATAATTGAATCATAG 819 0.4212 MVAAGEPMKKKAKQNLLNPNWVQLQRKLKLNNKSSRTYKEEDTPKSILGKRKESPNDESDDSQIDPLIPVNDDSSLTDAVAIDCEMVGVGQGNKSALGRVTMVNKWGNVLYDEFVRPVERVVDFRTKISGIRPRDLKKAIDFWTAQKKVAELMKGRILVGHALQNDLKALLLSHPKKDIRDTSEYQPFLKSGCRRALRHLAAEILGAEIQSGEHCPIQDARAAMLLYQRNRKEWERSLRDQFRLKKKQNKRKNKKKPKNEDTSNANHAIIES* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g2401 272 SUPERFAMILY Ribonuclease H-like 79 234 IPR012337 -
Amo07g2401 272 SMART exoiiiendus 78 236 IPR013520 -
Amo07g2401 272 MobiDBLite consensus disorder prediction 238 272 - -
Amo07g2401 272 MobiDBLite consensus disorder prediction 1 20 - -
Amo07g2401 272 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 31 255 - -
Amo07g2401 272 MobiDBLite consensus disorder prediction 33 59 - -
Amo07g2401 272 Gene3D - 75 255 IPR036397 GO:0003676
Amo07g2401 272 MobiDBLite consensus disorder prediction 32 71 - -
Amo07g2401 272 Coils Coil 217 237 - -
Amo07g2401 272 Pfam Exonuclease 80 227 IPR013520 -
Amo07g2401 272 PANTHER RNA EXONUCLEASE 4 31 255 - -
Amo07g2401 272 CDD REX4_like 80 228 IPR037431 GO:0006364|GO:0008408
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g2401 Amo-Chr7 71078088 71082296 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g2401 79 237 C2H2 Transcription Factor Family AT5G40310 36.000 3.34e-28 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g2401 K18327 - gmx:100819122 421.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1674 18 33855980 33860407 Amo07g2401 07 71078088 71082296 hybridization