Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g2387 ATGGAAAGTATGCATAAGTTTGTTCCTCTCGTTTGTCTTATTATTATTATGAGTATGGTTAAAATAGTGTTAGGAACAGCAATCGAAGTGAATAAGGGCATAGTAGGAGTTGTTGCAGACTATAATGATAGAAGTGGAAAAGAGGAAATAGTGGCTATTAAGATGGCATTGGAGGATTTCTATCATTACACCAATCAAAGCTTTGGTCTTCACATAAGGGACTCTCATGGGGATCCCCTTAAAGCTGCTCTTGCAGCAAGGGACCTTATTGACAAAGAGCAAGTGCAAGCAATTATAGGTCCACAAACATGGGAAGAAACAACATTAATAGCTGAACTTTGCAACCAAAACATGACACCTCTTCTATCCTTAGCAGATGTAACTCCAAATTGGGCAACATCAAAATGGCCCTTCATGGTTCAAACTTCACCTAATGCATTAAAACAAATGAAAGCAGTATCTGCTATTGTTCAATCATGGGATTGGTACAGTGTCAACATAATTTATGAAGACAAAGATGCTTCATCCACAGAATCTTTATCCAATATCTATTTAGCACTCACTGAAGCAGGTATCACAATAAGTAATCTCTTGAGTGTTCCTCCTTTTCCTTCCTCTTCATTGTCCAAAGATCTTGAGAATCTTAGAGATGGCCATTGTAGAGTCTTTGTTGTTGTTAGTTTGTCCCTCAATTTGGCCATAAACCTCTTCGAAACTGCGTCGAAAATGGATATGGTTGGGAAGGACTATGTTTGGATCATTACTGACCCTTTTACAAGCCTTGTTCATTCCTTAAATGCTTCAACTATATCCTCAATGCAAGGAATCATTGGAGTCAAGAGCTATTTCCAAGAAAATGGGAAAAAACATGAGGATTTCTACCGGAAATTTCGTCGAAAATTTAGCCTAGATTACCCTCAAGAACTCAACAATGAGCCAGGAACTTTTGCAGCACATGCTTATGATGCTGCATGGACTCTGGCTCTAGCCATGAGTCAAACCAACAATAATGAAGGTGGCAAATTCCTGATGAACAAGATTTTGCATAGTAATTTTCTTGGCCTAAAGGGAAGAATTCAATTCAATGATCATACCTTAGATCCTACACAGACTTTTCAAATCATCAATGTGATTGGGAAGGGATACAAGGAGATTGGTTTTTGGTCAAATGGACTTGGATTTTCAAGCAATATTGGTCAACATGATGTTAGTTATAGTTCTTCAATGAAGGAACTAGGACAGGTTATGTGGCCAGGTAGACCTTGGGAAACTCCAAGAGGGTGGGCCCTACCAACAATTGAGAAGCCATTAAGAGTTGGGGTCCCTGCTTTGTCCACATTGAAGCAATTTATAAACATAACTCATGATCAATTTCAGGGATTCACTATTGATCTTTTCAAAGCAACTATGGACTTGATGCCCTACCATGTTCCATACAAGTTCTATGCTTTCAATGATACTTATGATGAGTTGGTGAGACAAATTTATTTGAAGAATTTTGATGCAGTAATTGATGTAACAATAATCTCGTACCGGTACCAGTATGCCGAATTCACTCAGCCATACACTGATCCTGGAGTGGTGATGGTAGTCCCTTTGAAATCAAAAACAGGACACAGAGCTTGGCTGTTTGTGAAGCCTTTCACAAAGACAATGTGGATCCTAATAGTGTTAGTGATTATCTACAATGTCTTTGTTTTATGGATGCTAGAAAGAAATCATTTCTGTGAACTCAAGGGCTCCATACTCAAACAATATGGCAACATTGCTTGGTTGGCAATGACCCCTCTCGTAAACTTAAATGACATAGGAGATAAATTACACAACAATTTATCAAGGGTGGCTATGGTGGTGTGGTTATTTGTGGCCCTCATTATAATGCAGACATACACAGCCAACTTAACCAGCATGCTAACAGTTGAAAGACTTGAACCAACAATAGGTGATGTTGATCAGTTAAGAAATAACAATGCCATGGTTGGATACAGTACTGGATCTTTCTTGAAAAATTATCTTCATGATGTTCTACACTTTAACCCTGCAAACATAAGGCAATTTAGATCACATGAAGAGTTCGCTGAAGCTCTCAGAAGAAAAGAAATAGCAGCTGTCTTTATTGAAGCTCCTGGGGCCAAGATTTTCCTTGCAAAGTACTGTAAAGAGTTTATTCAAGCCGGGCCCATGTATAAAATCGGAGGATTCGGTTTCGCTTTTCCGCAAGGATCTCCATACCTTCCACTTGTGAACAAAGCACTGTTGGATTTATTTGAATCCGGAAAACAGAGGGAACTGGAGAACAGAATGCTTGCATCAGAGAAATGTGAAGAGTCTGAACCGGACACCGAAACTGCCAGTCTTAGCCCAAACAGCTTCTGGGCCTTGTTCACTTTGACAGCAGGTACATCAACAATTTCCCTCTTGATTTATGTCACCGGCACCAATTGGTTAACCTCCGCGGTGATTGAACAATTGGGACAAGCCAAGAGACGACTCTCAAGAAAAGATAGTCATGTTGCAGAAAGTCCTGTGAACTCTCCACATTCAGATTCACATGTTATGCAACTTCCTCAAGCTTGA 2577 0.3954 MESMHKFVPLVCLIIIMSMVKIVLGTAIEVNKGIVGVVADYNDRSGKEEIVAIKMALEDFYHYTNQSFGLHIRDSHGDPLKAALAARDLIDKEQVQAIIGPQTWEETTLIAELCNQNMTPLLSLADVTPNWATSKWPFMVQTSPNALKQMKAVSAIVQSWDWYSVNIIYEDKDASSTESLSNIYLALTEAGITISNLLSVPPFPSSSLSKDLENLRDGHCRVFVVVSLSLNLAINLFETASKMDMVGKDYVWIITDPFTSLVHSLNASTISSMQGIIGVKSYFQENGKKHEDFYRKFRRKFSLDYPQELNNEPGTFAAHAYDAAWTLALAMSQTNNNEGGKFLMNKILHSNFLGLKGRIQFNDHTLDPTQTFQIINVIGKGYKEIGFWSNGLGFSSNIGQHDVSYSSSMKELGQVMWPGRPWETPRGWALPTIEKPLRVGVPALSTLKQFINITHDQFQGFTIDLFKATMDLMPYHVPYKFYAFNDTYDELVRQIYLKNFDAVIDVTIISYRYQYAEFTQPYTDPGVVMVVPLKSKTGHRAWLFVKPFTKTMWILIVLVIIYNVFVLWMLERNHFCELKGSILKQYGNIAWLAMTPLVNLNDIGDKLHNNLSRVAMVVWLFVALIIMQTYTANLTSMLTVERLEPTIGDVDQLRNNNAMVGYSTGSFLKNYLHDVLHFNPANIRQFRSHEEFAEALRRKEIAAVFIEAPGAKIFLAKYCKEFIQAGPMYKIGGFGFAFPQGSPYLPLVNKALLDLFESGKQRELENRMLASEKCEESEPDTETASLSPNSFWALFTLTAGTSTISLLIYVTGTNWLTSAVIEQLGQAKRRLSRKDSHVAESPVNSPHSDSHVMQLPQA* 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g2387 858 SUPERFAMILY Periplasmic binding protein-like II 414 767 - -
Amo07g2387 858 Gene3D - 145 390 - -
Amo07g2387 858 Pfam Ligand-gated ion channel 768 800 IPR001320 GO:0015276|GO:0016020
Amo07g2387 858 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 25 848 - -
Amo07g2387 858 MobiDBLite consensus disorder prediction 832 858 - -
Amo07g2387 858 CDD PBP1_GABAb_receptor_plant 35 398 IPR044440 -
Amo07g2387 858 PIRSF IGluLR_plant 2 856 IPR017103 -
Amo07g2387 858 SMART GluR_14 436 771 IPR001320 GO:0015276|GO:0016020
Amo07g2387 858 Pfam Receptor family ligand binding region 52 378 IPR001828 -
Amo07g2387 858 MobiDBLite consensus disorder prediction 838 858 - -
Amo07g2387 858 Pfam Bacterial extracellular solute-binding proteins, family 3 455 767 IPR001638 -
Amo07g2387 858 CDD GluR_Plant 435 769 - -
Amo07g2387 858 Gene3D - 433 539 - -
Amo07g2387 858 Gene3D - 43 370 - -
Amo07g2387 858 PANTHER GLUTAMATE RECEPTOR 25 848 - -
Amo07g2387 858 SUPERFAMILY Periplasmic binding protein-like I 35 428 IPR028082 -
Amo07g2387 858 Gene3D - 540 675 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g2387 Amo-Chr7 70853004 70857914 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g2387 4 858 Ion Channels AT5G11180 31.133 1.09e-126 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g2387 - - var:108332761 1118.61