Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g2363 ATGTCGCATCCGGGGAAGCCCGTTACCGAGTTGGATTCGGTCACTGACCGATTCCGTGACTCACTGAGTTGCGAGGCCGCCAGTCGAGACGCTAACAAGCCAGATTTCCGCGAACTCGATCTGGGCTCGCCAGTATCGCCGCTTCGTACGGCTCACCACGCAGTCGGCGCTGCTGGAAACGGAGGACCCGCCGCCAGTAGCAGCTCAAGCTCATCCGGATCCTTCTCGGGTCGAACCAACCCGGTTTCCAGAAGATCCGATTCGGGACACACCAACAGCAACGGCAACAACAACCACTCTGGCGAGCTTTCTGGTTCAAGTGAGAACAGCCCAACCGCAACCGGCGGCGGGAACACTCGGATCCTGAAACCGGGTCAAGCGAGATCTGATTCAATCTATTCAGGTCAGAACGGAGGCTCCTCCTCCTCTTCCTCCTCAGCCGTAAATTCGCCGCCGCTGAACGTCCTCCCCACCGGAAACATCTGTCCCTCCGGTAGGATCTTGAAGACAGGCATGGCGGCGAATCGGAGCTCGAGGAGCGACGTTTTGGGCTCCGGCATGGGGAATTACGGCCACGGAAGCATAATTCGCGGCGGCGGAAAGAGCGGCAGCAGCACGCCTGATTCGCCAGGGATCCCAAGCGTGCGGTCGAGCAGCGGCATTGGCGGCGAAGGCAATGTGGCGAAGAGGGGAGCGACGCAGGGTTCGGATCCGGAGGAGCTGAAGAGAGCTGGGAATGAGCATTACAAGAGGGGCCACTTCGCCGAGGCATTAGGGTTATATGATCGGGCAATTGCGCTTTCTCCGGCAAGTGCCGCCTACCGGAGCAACCGCGCGGCGGCCCTTACAGGTCTTGGGAGGCTAGGTGAGGCTGTGAGGGAGTGTGAAGAGGCTGTGAGGTTGGATCCTAATTATGGCAGGGCTCATCATCGCTTGGCATCTCTTTTCTTAAGGTTGGGGCAAGTTGAGAATGCAAGGAAGCACCTTTGTTACCCTGGGATGCATCTGGATCCGTGTGAGATGCACAAGTTGCAATTGGTTGAAAAGCATATTGCCAAATGCGGAGATGTAAGGAGGATTAGGGATTGGGAAAGTGTTGTTAGAGAAGTTGATGCTGCTATTGCTGCTGGAGCTGATTCTTCTCCTCAGCTCTTTATGTGTAGAGCAGAAGCACTGTTGAAGTTACACCAAATTGACGATGCAGAATCAATTTCGATACATGTACCCAAATCGGAGCCACTTACTATTTCCTCTTCTCAAGCTAAATTTTTTGGAATGCTTTCTGAAGCTTATGTGTATTTCGTCAGAGCTCAGATTGAGATGGCATTGGGAAGGTTTGAGAATGCAGTTAAAGCAGCCGAGAAAGCCAGTCAAATGGACCCCCGGAACGTTGAAGTTGCTGTTTTGGTCAACAATGTGAGGATGGTGGCGAGAGCTCGAGTGCGTGGCAATGATCTTTTCAAATCAGAAAGGTTTACCGAAGCTTGCTCCGCATATGGAGATGGTTTGAGGCTTGATCCTTCAAATTCGGTTCTATATTGCAACAGAGCAGCTTGTTGGTTTAAGCTTGGGCAATGGGAAAGATCAATTGAAGACTCCAATCATGCTTTGAAAATCCAACCTAACTACACTAAAGCTCTTCTTCGAAGGGCCGCATCAAACAGTAAGCTTGAAAGGTGGGAAGAGGCAGTCAAGGACTATGAGGTCTTGCGGAAAGAACTTCCAAATAACAATGAAGTTGCCGAAGCTCTTTTCCACGCACAAGTTGCATTGAAAAAATCTCGTGGGGAAGAAGTATATAATTTAAAATTCGGCGGTGAAGTGGAACAGGTGTCGGGTCTTGAGCAGTTTAGAGCTGCAATAACTTTACCAGGTGTTTCTGTTGTCCATTTTGAAATTGCATCTAACTCGCAATGCAAGCAAATATCGCCCTTTGTGGATACACTATGTGGTCGATATCCATCCATCAACTTCCTCAAGGTGGATATTCAAGAAAACCCAACCGTTGCAACTGCCGAGAATGTTAGGATCGTACCGACCTTCAAGATATACAAAAACGGCAGCCGAGTGAAGGAAATCGTGTGCCCCAGTCGCGATATGTTGGAACATTCCGTGAGGCATTACAGTTTTTAG 2133 0.5087 MSHPGKPVTELDSVTDRFRDSLSCEAASRDANKPDFRELDLGSPVSPLRTAHHAVGAAGNGGPAASSSSSSSGSFSGRTNPVSRRSDSGHTNSNGNNNHSGELSGSSENSPTATGGGNTRILKPGQARSDSIYSGQNGGSSSSSSSAVNSPPLNVLPTGNICPSGRILKTGMAANRSSRSDVLGSGMGNYGHGSIIRGGGKSGSSTPDSPGIPSVRSSSGIGGEGNVAKRGATQGSDPEELKRAGNEHYKRGHFAEALGLYDRAIALSPASAAYRSNRAAALTGLGRLGEAVRECEEAVRLDPNYGRAHHRLASLFLRLGQVENARKHLCYPGMHLDPCEMHKLQLVEKHIAKCGDVRRIRDWESVVREVDAAIAAGADSSPQLFMCRAEALLKLHQIDDAESISIHVPKSEPLTISSSQAKFFGMLSEAYVYFVRAQIEMALGRFENAVKAAEKASQMDPRNVEVAVLVNNVRMVARARVRGNDLFKSERFTEACSAYGDGLRLDPSNSVLYCNRAACWFKLGQWERSIEDSNHALKIQPNYTKALLRRAASNSKLERWEEAVKDYEVLRKELPNNNEVAEALFHAQVALKKSRGEEVYNLKFGGEVEQVSGLEQFRAAITLPGVSVVHFEIASNSQCKQISPFVDTLCGRYPSINFLKVDIQENPTVATAENVRIVPTFKIYKNGSRVKEIVCPSRDMLEHSVRHYSF* 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g2363 710 Pfam Tetratricopeptide repeat 244 304 - -
Amo07g2363 710 ProSiteProfiles TPR repeat profile. 510 543 IPR019734 GO:0005515
Amo07g2363 710 MobiDBLite consensus disorder prediction 25 160 - -
Amo07g2363 710 Pfam Thioredoxin 617 701 IPR013766 -
Amo07g2363 710 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN TTL1 11 708 - -
Amo07g2363 710 MobiDBLite consensus disorder prediction 199 221 - -
Amo07g2363 710 Pfam Tetratricopeptide repeat 546 576 IPR019734 GO:0005515
Amo07g2363 710 SUPERFAMILY TPR-like 237 466 IPR011990 GO:0005515
Amo07g2363 710 MobiDBLite consensus disorder prediction 172 240 - -
Amo07g2363 710 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 11 708 IPR044534 -
Amo07g2363 710 Gene3D Glutaredoxin 603 709 - -
Amo07g2363 710 MobiDBLite consensus disorder prediction 62 119 - -
Amo07g2363 710 SMART tpr_5 430 463 IPR019734 GO:0005515
Amo07g2363 710 SMART tpr_5 272 305 IPR019734 GO:0005515
Amo07g2363 710 SMART tpr_5 476 509 IPR019734 GO:0005515
Amo07g2363 710 SMART tpr_5 510 543 IPR019734 GO:0005515
Amo07g2363 710 SMART tpr_5 238 271 IPR019734 GO:0005515
Amo07g2363 710 SMART tpr_5 544 577 IPR019734 GO:0005515
Amo07g2363 710 ProSiteProfiles TPR repeat profile. 238 271 IPR019734 GO:0005515
Amo07g2363 710 Gene3D Tetratricopeptide repeat domain 236 596 IPR011990 GO:0005515
Amo07g2363 710 Coils Coil 436 456 - -
Amo07g2363 710 ProSiteProfiles TPR repeat profile. 430 463 IPR019734 GO:0005515
Amo07g2363 710 SUPERFAMILY Thioredoxin-like 513 708 IPR036249 -
Amo07g2363 710 MobiDBLite consensus disorder prediction 129 157 - -
Amo07g2363 710 CDD TRX_family 615 702 - -
Amo07g2363 710 Pfam Tetratricopeptide repeat 431 463 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g2363 Amo-Chr7 70436276 70439813 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g2363 475 620 U-box Gene Family AT3G07370 28.415 3.55e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g2363 - - adu:107459775 1255.74