Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g2339 ATGTCGGGTGTGGGGCCCATATCGCAGGATTGGGAGCCAGTGGTGATAAGGAAGAAGGCACCAAACGCTGCGGCCAAGAAGGATGAGAAAGCTGTCAATGCTGCTCGCCGCGCCGGAGCTGAGATTGAAACCGTCAAGAAATCAAATGCTGGAACAAATAGAGCTGCCTCTAGTAGCACTTCTTTGAACACCAGGAAGCTTGATGAAGAAACCGAGAATCTTCACCACGACCGTGTACCATCAGAACTAAAGAAAGCCATCATGCAGGCCCGACTGGACAAAAAACTTACTCAGGCTCAGCTCGCTCAGATGATCAATGAGAAGCCACAGATTATACAGGAATATGAATCTGGCAAAGCCATACCAAATCAACAAATCATAGGGAAACTGGAGAGAGCTCTTGGTGCAAAGCTTCGTGGAAAGAAATGA 429 0.4802 MSGVGPISQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIETVKKSNAGTNRAASSSTSLNTRKLDEETENLHHDRVPSELKKAIMQARLDKKLTQAQLAQMINEKPQIIQEYESGKAIPNQQIIGKLERALGAKLRGKK* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g2339 142 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 1 142 - -
Amo07g2339 142 Gene3D - 71 142 IPR010982 GO:0003677
Amo07g2339 142 CDD HTH_XRE 85 135 IPR001387 -
Amo07g2339 142 Pfam Helix-turn-helix 87 137 IPR001387 -
Amo07g2339 142 ProSiteProfiles Cro/C1-type HTH domain profile. 87 141 IPR001387 -
Amo07g2339 142 MobiDBLite consensus disorder prediction 65 80 - -
Amo07g2339 142 MobiDBLite consensus disorder prediction 46 64 - -
Amo07g2339 142 MobiDBLite consensus disorder prediction 21 43 - -
Amo07g2339 142 MobiDBLite consensus disorder prediction 21 80 - -
Amo07g2339 142 Pfam Multiprotein bridging factor 1 9 79 IPR013729 -
Amo07g2339 142 SUPERFAMILY lambda repressor-like DNA-binding domains 81 138 IPR010982 GO:0003677
Amo07g2339 142 PANTHER MULTIPROTEIN BRIDGING FACTOR 1B 1 142 - -
Amo07g2339 142 SMART mbf_short4 86 141 IPR001387 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g2339 Amo-Chr7 70012167 70015203 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Amo07g2339 MBF1 6.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g2339 K03627 - rcu:8288271 257.684