Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g2337 ATGTCTCTAAGGAAGGTGTTCCGCTCACGGAAATTCTCGAAATCGTTCATGGAGGTTAACGCTGCGGTAGCTCCTAAGGTGGAGGGAGGGGAAAAGAAGGAGGAGGCAGGGGAGGAGGGGAATGCGTGGTCGGGGATGTTGCCGGAGCTGCTGGGAGAGATTATAAGAAGGGTGGAGGTGGAGGAGGAGCAGTGGCCGCAGCGGCAGAACGTGGTGGCGTGCGCCTGTGTCTGCAAGCGGTGGAGGGACATGACGCGTGAGATCGTTGGACAGCCTCATAATAACGGCAAAATCACTTTTCCTTCATGTCTTAGGAAGCCAGGTCCACGTGAACTTCCCAACCAGTGTCTGATAAAGCGAAACAAGAAGACCTCGACATTTTATCTATATCTTGCCTTAACACCATCATTCACAGACAAAGGGAAGTTTTTGTTGGCGGCTAGAAGATACAGGTTTGGTACCCATACTGAATATATAATATCACTTGATGCCGAGGACTTATCCCAAGGAAGCAATGCTTATGTTGGAAAATTAAGCTCGGATTTTCTTGGCACCAACTTCACAATTTACGACAGTCAACCACCCCATGCTGGTGCAAAACCATCGAGTGGCAGGTCTAGTCGCCGTTTTGCCAGCAAACAGATAAGCCCTCAAGTTCCTGCTGGTAACTTTGAAGTGGGGCAGGTCTCCTACAAGTTCAACCTCTTGAAATCAAGAGGGCCAAGGAGGATGGTTTGCTCCCTCAAGTGTCCCGCAACACCATTGGGAGAAACTTCAGATATCACATCATTGGACGGCAACAAGACAAACAGTAAAGATCAAGCTACTCCTACCTGCACAGTCTTGAAGAACAAAGCACCAAGGTGGCACGAGCATTTGCAGTGCTGGTGCTTGAATTTTCATGGCCGCGTGACAGTAGCATCCGTGAAGAACTTTCAGCTGGTTGCTACGGTGGACCAAAGCCAACCAGGAGGGAAAGGAGATGAGGACACGGTTCTCCTGCAGTTTGGCAAAGTGGGGGATGATACTTTCACCATGGATTATAGGCAGCCCTTATCTGCCTTTCAGGCATTTGCCATTTGCTTGACTAGCTTTGGCACTAAACTGGCATGTGAGTAA 1119 0.4942 MSLRKVFRSRKFSKSFMEVNAAVAPKVEGGEKKEEAGEEGNAWSGMLPELLGEIIRRVEVEEEQWPQRQNVVACACVCKRWRDMTREIVGQPHNNGKITFPSCLRKPGPRELPNQCLIKRNKKTSTFYLYLALTPSFTDKGKFLLAARRYRFGTHTEYIISLDAEDLSQGSNAYVGKLSSDFLGTNFTIYDSQPPHAGAKPSSGRSSRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCSLKCPATPLGETSDITSLDGNKTNSKDQATPTCTVLKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEDTVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g2337 372 PANTHER TUBBY-LIKE F-BOX PROTEIN 7 2 372 - -
Amo07g2337 372 ProSitePatterns Tub family signature 2. 357 372 IPR018066 -
Amo07g2337 372 MobiDBLite consensus disorder prediction 193 214 - -
Amo07g2337 372 SUPERFAMILY Tubby C-terminal domain-like 93 372 IPR025659 -
Amo07g2337 372 PANTHER TUBBY-RELATED 2 372 - -
Amo07g2337 372 Pfam Tub family 104 367 IPR000007 -
Amo07g2337 372 PRINTS Tubby superfamily signature 158 174 IPR000007 -
Amo07g2337 372 PRINTS Tubby superfamily signature 174 198 IPR000007 -
Amo07g2337 372 PRINTS Tubby superfamily signature 223 250 IPR000007 -
Amo07g2337 372 PRINTS Tubby superfamily signature 282 299 IPR000007 -
Amo07g2337 372 PRINTS Tubby superfamily signature 300 316 IPR000007 -
Amo07g2337 372 PRINTS Tubby superfamily signature 329 348 IPR000007 -
Amo07g2337 372 PRINTS Tubby superfamily signature 350 372 IPR000007 -
Amo07g2337 372 Gene3D Tubby Protein; Chain A 99 372 IPR025659 -
Amo07g2337 372 Pfam F-box domain 44 88 IPR001810 GO:0005515
Amo07g2337 372 ProSitePatterns Tub family signature 1. 300 313 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g2337 Amo-Chr7 69998473 70002892 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g2337 1 372 TUB Transcription Factor Family AT1G53320 71.842 0.0 549
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Amo07g2337 Tub 2.8e-101 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g2337 K19600 - gmx:100808096 623.239