Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g2240 ATGGTGGTGCAGCCCAGTACGCCGGCACGACCTTCTTTCTCTCCTCTTCCCCTTATCTGCGGCCCCTTCCCCTTTTCCCATTCTCCTTTCTATTTTCTTTCTTTCCTTTTTCAGATAACTGTGTGTGTGTGTGTGTGTGTGTTTAGGATAGGGGTGGCGGCTGCTGCTGCTACTATCGTCAATATACCAACACAGATAGTGCCTCATGCCTATGACTCAGCCTTTGCCTCTCTTCAATTCCAATATCCATGGCCTTTAGCCTTTGAAGGGTTTCCAGAAGATAGAGCTGCAAGTGCTTCTAAGAGCCATAGCCAAGCAGAGAAAAGAAGAAGGGACAGGATCAATGCACAGCTTGCAACTCTTAGAAAACTGATTCCTAAGTCTGATAAGATGGACAAGGCTGCATTACTAGGGAATGTAGTATATCATGTGAAGGATCTAAAGCGAAAAGCGATGGATGTGAGCAAAAGCATCATAGTTCCAAGTGAAATTGATGAAGTAACAATAATAGAGTGTGACCCTGATCAAGATGAAAGCTATGCTAAAGTGAAGATACTGAAGCACAACATTGTAATTTCAGTTTGTTGTGATGATAGACCTGAACTTTTCAGTGAACTCATTCAAGTCCTAAAAGGGTTGAGGCTCATAAATCAAGATCATAACATATTCAGAAGCAGCAAACAGCTAACAGAAGTAGCAAAACAGAAGCAGCAAAACATACTCAAAATAAAAAACATCAGAAAATCAGAATCCAAAATCAAGAAGGCAGCATAG 774 0.416 MVVQPSTPARPSFSPLPLICGPFPFSHSPFYFLSFLFQITVCVCVCVFRIGVAAAAATIVNIPTQIVPHAYDSAFASLQFQYPWPLAFEGFPEDRAASASKSHSQAEKRRRDRINAQLATLRKLIPKSDKMDKAALLGNVVYHVKDLKRKAMDVSKSIIVPSEIDEVTIIECDPDQDESYAKVKILKHNIVISVCCDDRPELFSELIQVLKGLRLINQDHNIFRSSKQLTEVAKQKQQNILKIKNIRKSESKIKKAA* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g2240 257 CDD bHLH_AtAIG1_like 93 170 - -
Amo07g2240 257 Gene3D - 93 156 IPR036638 GO:0046983
Amo07g2240 257 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 98 147 IPR011598 GO:0046983
Amo07g2240 257 Pfam Helix-loop-helix DNA-binding domain 101 147 IPR011598 GO:0046983
Amo07g2240 257 PANTHER TRANSCRIPTION FACTOR BHLH30 81 216 IPR045847 GO:0003700|GO:0006355
Amo07g2240 257 SMART finulus 104 153 IPR011598 GO:0046983
Amo07g2240 257 PANTHER TRANSCRIPTION FACTOR BHLH51 81 216 - -
Amo07g2240 257 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 99 151 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g2240 Amo-Chr7 67815670 67817228 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g2240 87 215 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 46.043 7.84e-28 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo07g2240 HLH 1.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g2240 - - ahf:112701622 375.941