Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g2238 ATGAAGATTCAGTGCAACGTGTGTGAGGCTGCTGAGGCTAAAGTTCTTTGCTGTGCTGATGAGGCTGCGCTTTGTTGGGAGTGTGATGAGAAGGTTCATGCTGCTAACAAGCTCGCTAGCAAGCACCAGAGGGTTCCACTTTCCATGTCTTCTTCTCACATGCCCAAATGTGATATTTGTCAGGAAGCATTTGGCTATTTCTTCTGTCTAGAGGATCGAGCTTTACTGTGTCGAAAGTGTGATGTAGCAATACACACGGCGAATACTTATGTCTCCGGTCATCAGAGGTTTCTTCTCACTGGTGTAAGAGTAGGTCTAGAAGCAACCGAGCCCGGTGGTACTTCTTCAACTTCTTTGAAGTCGGATTCTGGGGAGAAAGCTTCCGACACCAAGTCCTCTTCTGTCTCCAGAAAGGTGTCGACGATGCCCCAGTCGTCGGATTACAATGAAATGTTACCCCTTGATGCTGGGGGAGTTGGCGAGATGCCTCCAGCTAAGGAGTCTTATGGTGGTGGTTCTACTGCCGGAAATATCTCACCGTGGCCGATCGAAGAATTCCTTGGCCTAAATGATTTCGGTCAAGGTTATAATTACATGGAAGGATCATCAAAGGCTGATAGTGGTAAGCTTGGGGATTCTGATTCTCCGGTCTTGAGATCCGTCGAAGAGGAAATGGGAATGGAGGACGACGATGAGTACCTGAGCCGCGTTCCGGATTCACCGTGGACAGTTCAGCAGGTCCCTTCTCCTCCTACAGCTTCCGGGTTGTACTGGCCGAAAGACCCTCAGTTTTCATCCGACCATGCTATGTTTGTTCCGGACATATGCTGTTCTCCCATGCAAGAGACTCGGTATTCGAGGCGGCGGAGGCACCACCTTTGA 882 0.4966 MKIQCNVCEAAEAKVLCCADEAALCWECDEKVHAANKLASKHQRVPLSMSSSHMPKCDICQEAFGYFFCLEDRALLCRKCDVAIHTANTYVSGHQRFLLTGVRVGLEATEPGGTSSTSLKSDSGEKASDTKSSSVSRKVSTMPQSSDYNEMLPLDAGGVGEMPPAKESYGGGSTAGNISPWPIEEFLGLNDFGQGYNYMEGSSKADSGKLGDSDSPVLRSVEEEMGMEDDDEYLSRVPDSPWTVQQVPSPPTASGLYWPKDPQFSSDHAMFVPDICCSPMQETRYSRRRRHHL* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g2238 293 MobiDBLite consensus disorder prediction 109 176 - -
Amo07g2238 293 MobiDBLite consensus disorder prediction 110 148 - -
Amo07g2238 293 SMART bboxneu5 52 99 IPR000315 GO:0008270
Amo07g2238 293 SMART bboxneu5 4 47 IPR000315 GO:0008270
Amo07g2238 293 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Amo07g2238 293 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 282 - -
Amo07g2238 293 Gene3D Classic Zinc Finger 1 92 - -
Amo07g2238 293 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Amo07g2238 293 PANTHER B-BOX ZINC FINGER PROTEIN 18 1 282 - -
Amo07g2238 293 Pfam B-box zinc finger 54 95 IPR000315 GO:0008270
Amo07g2238 293 CDD Bbox1_BBX-like 5 47 - -
Amo07g2238 293 CDD Bbox1_BBX-like 56 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g2238 Amo-Chr7 67705607 67708523 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g2238 1 289 C2C2-CO-like Transcription Factor Family AT1G78600 48.485 2.96e-89 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Amo07g2238 zf-B_box 6.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g2238 - - gmx:100790959 462.225