Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g2230 ATGAAAACCGTTTCCCTTTTTGCCCAATGTTTGTGGCTTTCTGCGATTGTGATTTATCTTATAGGAGAATATGAGAGGCTTGGTGAGGCTGATTGTATCTACTATTTGAGGACTGGATTTTATGGCTATGGTTCCCACTGCCGTTTCAACCATCCCCGTGACCAGGCCGAGTTAAAATTTATAGTTCATTTGATTTTTAAGTTGGTGGAAGTGATCTAA 219 0.4018 MKTVSLFAQCLWLSAIVIYLIGEYERLGEADCIYYLRTGFYGYGSHCRFNHPRDQAELKFIVHLIFKLVEVI* 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g2230 72 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 28 53 IPR000571 GO:0046872
Amo07g2230 72 ProSiteProfiles Zinc finger C3H1-type profile. 26 54 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g2230 Amo-Chr7 67442326 67442825 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g2230 25 56 C2H2 Transcription Factor Family AT5G18550 75.000 6.07e-13 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo07g2230 zf-CCCH 8.2e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g2230 - - tcc:18603462 62.7734