Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g2138 ATGAAACAGGCCTACTTCCCACCAATTTCACAGCTTGAAGGATTGCCACTTAAAATCCTTGATGCAAAAGGCAAGGAATGGATATTTCAATTTCGCTTCTGGCCAAACAATAATAGCAGGATGTATGTTTTAGAGGGTGTCACTCCTTGCATACAGTCAATGCAGTTGCAAGTAGGTGACACAGTAACATTTAGTCGATTGGAGCCAGAAGGGAGGTTGGTTATGGGATTTAGAAAGGCTTCAAATGCCACGCCATCTGATCAGAGATTTCACTTTTGGAAACAGAAAAAGCCTCTGATATCCAATTGTGGTGCCATTTGTAACTCTCTTCAAAAGATAAAGACCGACAAGTACATTCAAAGGCAACCCAAGGTAATTGACTAA 384 0.4089 MKQAYFPPISQLEGLPLKILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQVGDTVTFSRLEPEGRLVMGFRKASNATPSDQRFHFWKQKKPLISNCGAICNSLQKIKTDKYIQRQPKVID* 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g2138 127 CDD B3_DNA 4 79 IPR003340 GO:0003677
Amo07g2138 127 SMART B3_2 1 81 IPR003340 GO:0003677
Amo07g2138 127 ProSiteProfiles B3 DNA-binding domain profile. 1 81 IPR003340 GO:0003677
Amo07g2138 127 Pfam B3 DNA binding domain 16 79 IPR003340 GO:0003677
Amo07g2138 127 Gene3D - 1 85 IPR015300 -
Amo07g2138 127 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 111 - -
Amo07g2138 127 SUPERFAMILY DNA-binding pseudobarrel domain 5 79 IPR015300 -
Amo07g2138 127 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300-LIKE ISOFORM X1 3 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g2138 Amo-Chr7 65374912 65376504 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g2138 3 86 B3 DNA Binding Superfamily AT4G32010 83.333 4.29e-46 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo07g2138 B3 1.8e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g2138 - - gmx:100807252 169.474