Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g2081 ATGGACAGGCTTTATAATTCGGACATACCCGGTTGGGACCCGATAAGCAAAGCGGGTATTCGGAACATCGGGGAACTGGATGCTGAAAATGTGGGAATTGACCAAGCTCCCCTGAAGCAGCCAGGCGAGGTCGATCTCCTCCTCCTCAGTCTAGAAGAGCTTCTCCTCCTCCAAGGTAACTTTGGTGAGGTTGTAAGTGTGGAGTTGGCAATGGACCGAACTGTTAATCTTCCAAAAGGATATGGATATGTGCAGTTTAAGACAAGAGCAGATGCTGAACAAGCTTTATTGCACATGGATGGTGCCCAAATAGATGGGAATGTTGTTAAGGCAAGATTTACACTACCTCCTAGACAGAAAGTTTCTTCACCACCAAAAGCTGCTGCTGTTGCTCTGAAGAGAGATGGCCCTAGGACTGATAATGCTAGTGCAGATGTTGAAAAGGACGGGACAAAGCGGCCAAGAGAATGTATATACCTGATGTTTTGGCATAGTCTTCTGCTTTTTGTTCTTTTTGTTTTTGGTTTTTGGGTCTGGACAAATAGTAACTGTAAATTAATGACACCAGCTCCTCGGAGAAAACCTCCTCCCTCGCCACGAAGAAGATCTCCTGTGCCTCGAAGAGTTGGATCTCCAAGACGACCAGATTCTCCAATTCGCCGTCGTGCAGATTCTCCAATTCGCCGTCGATTAGACTCTCCTCATCGTCGTGGAGACACACCTCCTAGGAGGAGGCCTATATCCCCTGGGAGAGGCCGTTCTCCATCTCCACCTAGGCGTCTTAGATCCCCTGCAAGGGTCTCGCCAAGAAGGTTGCGGGGAAGTCCAGGTCGTAGACGTTCCCCTCCTCCTCTAAGGCGCCGTTCACCGCCTAGACGAGCTCGTAGTCCTCCTAGAAGGTCTCCAATAAGTCGTAGGCGCAGTCGCTCTCCAATACGTAGACGCTCACGCTCAAGATCATTCTCACCTCGAAGAGGTCGACCACCTGTAAGACGTGGGAGGTCTTCATCCTACTCTGACTCGCCAAGTCCACGGAAGGTATCCCGGAGATCGAAGAGTCGCAGTCGCAGCCCAAGAAGGCCTTTGAGAGGAAGAGGCAGTAGCAACAGCAGCAGCAGCAGTTCACCACCCCCACCTCGCAAACCCTAG 1149 0.5091 MDRLYNSDIPGWDPISKAGIRNIGELDAENVGIDQAPLKQPGEVDLLLLSLEELLLLQGNFGEVVSVELAMDRTVNLPKGYGYVQFKTRADAEQALLHMDGAQIDGNVVKARFTLPPRQKVSSPPKAAAVALKRDGPRTDNASADVEKDGTKRPRECIYLMFWHSLLLFVLFVFGFWVWTNSNCKLMTPAPRRKPPPSPRRRSPVPRRVGSPRRPDSPIRRRADSPIRRRLDSPHRRGDTPPRRRPISPGRGRSPSPPRRLRSPARVSPRRLRGSPGRRRSPPPLRRRSPPRRARSPPRRSPISRRRSRSPIRRRSRSRSFSPRRGRPPVRRGRSSSYSDSPSPRKVSRRSKSRSRSPRRPLRGRGSSNSSSSSSPPPPRKP* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g2081 382 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 57 157 - -
Amo07g2081 382 PANTHER BNAA09G56240D PROTEIN 190 368 - -
Amo07g2081 382 MobiDBLite consensus disorder prediction 264 331 - -
Amo07g2081 382 MobiDBLite consensus disorder prediction 186 382 - -
Amo07g2081 382 MobiDBLite consensus disorder prediction 213 246 - -
Amo07g2081 382 SMART rrm1_1 30 112 IPR000504 GO:0003723
Amo07g2081 382 SUPERFAMILY RNA-binding domain, RBD 53 122 IPR035979 GO:0003676
Amo07g2081 382 PANTHER BNAA09G56240D PROTEIN 57 157 - -
Amo07g2081 382 MobiDBLite consensus disorder prediction 117 149 - -
Amo07g2081 382 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 110 IPR000504 GO:0003723
Amo07g2081 382 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 116 IPR000504 GO:0003723
Amo07g2081 382 Gene3D - 49 155 IPR012677 -
Amo07g2081 382 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 190 368 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g2081 61 119 Eukaryotic Initiation Factors Gene Family AT5G06000 28.814 9.35e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g2081 K14325 - gmx:100783566 171.785