Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g2078 ATGTATCATGAAAGCAAAGCAATGAAAGCAGTTGTTCTTATTGTCAAACGATGTTTAAGTAATGACATTCATATGGAAAGGCCTAGCATGGCTCCTCATTTGCTTACATCATTTCATGAAAGGTCATGTTGCTGCATTGATAAAGAAGATTGGGAAGGTTCCAATGTGCTCCTTTTTTATGGTTTGTGGGCCTTGTCTTCATTTGTTCATCAGTGTAGCCTTTTACAAGATCATACTCAGAAATTCACCACAGCAGTGACATACATTAAAGCTCAATTACTCAACAAGCTTCATGAGACTTGTAGTAGCACCTGTTTAAGTCCTGGAGTGAGATGGTATGCTTCATATATTCTAAGCTATTTTGGATGTTATGGTTTCCCTAATGAATTAGCAAAATGGATTGGGAAATCCCTTAATCAGGAAGAATATGCGGATTTGCGACTCATTGTGGCAAATGGGGCTTCTGTCAATGTTAATGGTGTTATTCTTGCTGTCAGATGTCCATCGCTTCTGCCTCGTGAAATCTTGACTAGTAGCAAGAATTGTGAAGAGGGAACAGATAAATATGGAGAGACTATGAGAGAGGTTCGTTTATCTGCTCATGTTGATTATGAAGCATTGGTGCTGTTGTTGGAATATGTTTACTTGGGATGCTTGCAGGCAGAGGAAGACATGGTAAAAAAGTTGAAAATTCTTGCTAAACGCTGCAATCTGCAGCCCTTTCTGCAACTACTCTATAGACAATGTCCTGAGTGGGGCACACCTTTCCCCTGCTTGAATCTTACTTCAGCTCTCAATTCTGTTGGAAGTTGTTTTTCGGATGTCATATTGGAAGCTGAAACAAATGAACTTGTTGGGTGGACATGCAATTTTTGTTCTAACTCGGTGCCACATTCGCATGTTCACAAAGTTATATTGCAGTCTGGCTGTGAATATTTACAAGGTTTATTCCGATCAGGAATGCAAGAGAGTCATTCACAAGTCATCAAGGTTGCTATTAGCTGGGAAGCATTGATCAAACTAGTACAGTGGTTTTATTCCAATAATCTGCCAAATCCTCCCGCTGGATGTTTGTGGGATAATATGGATGATGAAAAAGCTATTCAATCTGCAACCATATGTGGAACTTAA 1131 0.3943 MYHESKAMKAVVLIVKRCLSNDIHMERPSMAPHLLTSFHERSCCCIDKEDWEGSNVLLFYGLWALSSFVHQCSLLQDHTQKFTTAVTYIKAQLLNKLHETCSSTCLSPGVRWYASYILSYFGCYGFPNELAKWIGKSLNQEEYADLRLIVANGASVNVNGVILAVRCPSLLPREILTSSKNCEEGTDKYGETMREVRLSAHVDYEALVLLLEYVYLGCLQAEEDMVKKLKILAKRCNLQPFLQLLYRQCPEWGTPFPCLNLTSALNSVGSCFSDVILEAETNELVGWTCNFCSNSVPHSHVHKVILQSGCEYLQGLFRSGMQESHSQVIKVAISWEALIKLVQWFYSNNLPNPPAGCLWDNMDDEKAIQSATICGT* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g2078 376 SUPERFAMILY POZ domain 271 353 IPR011333 -
Amo07g2078 376 Gene3D Potassium Channel Kv1.1; Chain A 126 249 IPR011333 -
Amo07g2078 376 Pfam BTB/POZ domain 299 358 IPR000210 GO:0005515
Amo07g2078 376 Pfam BTB/POZ domain 136 235 IPR000210 GO:0005515
Amo07g2078 376 ProSiteProfiles BTB domain profile. 144 223 IPR000210 GO:0005515
Amo07g2078 376 PANTHER OS06G0674800 PROTEIN 4 369 IPR044953 -
Amo07g2078 376 CDD BTB_POZ_ZBTB_KLHL-like 272 350 - -
Amo07g2078 376 ProSiteProfiles BTB domain profile. 273 354 IPR000210 GO:0005515
Amo07g2078 376 SUPERFAMILY POZ domain 125 244 IPR011333 -
Amo07g2078 376 Gene3D Potassium Channel Kv1.1; Chain A 258 369 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g2078 Amo-Chr7 63779309 63783728 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Amo07g2078 BTB 4.7e-06 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g2078 - - gsj:114385670 560.836