Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g2025 ATGGTGCTTCATCCTCGTCCACGCCGTTCCAATGGGAACGACCAGCAGCCTGTAGCTGAAGCTGAAGCTGATGGCCGAGGCACCAGTGTTAACTATGCAGATATTCACACTATATCTTCTGATTCTGATTCTGATTCTGATTCTGATTCTGATTCTATTGTATATTCAAATTCTAGTTACGAAGGATTGCTAGATAACTTCAATCAAGAACCAGGGTCAAGTAGTAGCAGTTGTGACACTTCTGATTATTATGAACATGGAAAAAGGCAAAAGCCAAAGTTCAGTAAGGCAAGAAGTTCTCACGTGAAAAATAGAGGACCAAATGATGTTGATAGAGTGGTGGACAATGCAGATATGAATGAATTCTCAATGATTCAGCAGGAATCAGTTCCCCATGATTTGACTGGAACAAAAAAGAAGAAAAATAGAAAAAAAAGAAAAGGGAAAAAGCCAAAGCTGCTATGGCAAGTATGGGAAAATGACCAAGAAAGATGGATTGATGAGAATTTTTCAGAAGATGGTGACTTAGATAATCAGAATGAAGTATTGACAGAAACTGCTGAGGCATCTTCTGATCTGACTATGCCTTTACTTAGGTACCAAAAGGAATGGTTAGCCTGGGCTTTGAAACAGGAAAATTCTGATACTAGAGGTGGCATCCTTGCAGATGAAATGGGAATGGGAAAGACGATTCAAGCAATAGCACTTGTCCTTGCCAAACGTGAATTGATGCAAAGTAGTTCTGCACCAGCTGAACCCATACTATCGCATTCACCTTCTTTATCTGGAATCTTGCCTGCGATCAAAGGAACACTTGTCATTTGTCCTGTTGTCGCTGTTACTCAGTGGGTTAATGAGATTGATCGGTTTACCATCAAAGGAAGCACCAAGGTGCTCGTTTATCATGGGGCAAGGAGAGGGAAGAGTATTGAACAGTTCTTGGATTATGATTTTGTGATAACTACGTACTCTACTGTTGAGTCTGAGTACAGGAAGTTTATGATGCCTCCTAAGGAAAAACAATCAAGGCAAGTTAAGAAGAAAACAGAAGTCACTAGAGGGATGTACAAAGAAGGTGTGAGTAAGATGTCTTGTAGTGAAAATGAACTGAGCATGGACGCAGAAGATGCAAATGCCACACACAGGGGTATGTCACTTCTTCATGCTGTTAAATGGCTGCGGATTATATTGGACGAGGCACACTACATAAAGTCCAGACATAGTAACACAGCAAAAGCAGTTCTTGCTTTAGAGTCTTCCTACAAATGGGCTTTAAGTGGCACTCCCATTCAGAACCGTGTTGGAGAACTGTATTCTCTGGTACGGTTCCTGCAAATAACTCCGTATTCATTTTACTTGTGCATGGACTGTGATTGCAGGACCCTTGATCACAGCTCCAAACAATGTCCAGACTGCAGCCACAGTTCAGTTAGACATTTCTGTTGGTGGAATAAATATGTTTCCACACCAATTCAATCCTCTCTAAGTAGCTATGATGGGCGGGGTAATAGAGCTATGGTCTTGCTTAAACACAAAGTTCTGAAGAACATACTACTAAGGCGCACTAAAATAGGCAGGGCTGCTGATCTTGCACTTCCTCCTAGAATTGTCTCACTGAGAAGGGATTGTCTGGATATAAAAGAGCAAGACTATTATGAGTCATTATACAATGAAAGTCAGGCACAATTTAATACGTATGTCGAATCTAATACACTGATGAATAATTATGCTCATATATTTGATCTTCTCACACGGCTGCGTCAGGCTGTTGATCATCCATACCTTGTGGTATATTCTCAAGCTGCAGCACGACAAGGTGGCCATGTGGCTAGTAATTCTACTGCTGAAGAACAAGCATGTGGCATTTGTCATGAACCAGTGGAAGATCCTGTGGTTACCTCTTGTGAGCATAGATTTTGCAAGACATGCTTGATAGATTTCTCTACTGCTTTGGGACAAGTATCRTGCCCTTCATGCTCTCAATTACCTACTGTTGATTTAACTTCCCACAAGGATGTTGGRTACCAGGCAAATAAAACCACTATTAAGGGATYCAGATCCTCAAGCATTTTARACAGAATTCAGCTTGAGAACTTTCAGACAAGTACTAAAATAGAGGCTTTGCGAGAAGAAATAAGATCTATGGTCGAAAGGGATGGTTCTGCCAAAGGGATTGTTTTTAGTCAGTTCACATCATTCTTGGATCTAATAAACTTCTCTTTGAATAAGTCTGGGGTATCTTGTGTTCAATTGAATGGAAATATGACAATGACTGCCCGAGATGCTGCCATTAAGAGGTTTACCAATGATCCAGACTGCAGGATTTTTCTCATGAGCCTGAAGACCGGAGGCGTTGCACTCAATTTGACTGTAGCATCACATGTTTTCCTTATGGATCCTTGGTGGAACCCAGCTGCGGAGCGTCAGGCTCAAGACAGAATTCACCGAATAGGACAATTTAAACCTATAAGAATTGTGAGATTTATAATTGAGAACACTGTTGAGGAGAGGATTTTGAATCTGCAACAGAAGAAGGAACTAGTGTTTGAAGGGATTATAGGTGGCTCTTCTGATGCTCTGGGAAAACTGACGGAGGGAGACTTGAAATTCCTATTTGGTACATAG 2625 0.4103 MVLHPRPRRSNGNDQQPVAEAEADGRGTSVNYADIHTISSDSDSDSDSDSDSIVYSNSSYEGLLDNFNQEPGSSSSSCDTSDYYEHGKRQKPKFSKARSSHVKNRGPNDVDRVVDNADMNEFSMIQQESVPHDLTGTKKKKNRKKRKGKKPKLLWQVWENDQERWIDENFSEDGDLDNQNEVLTETAEASSDLTMPLLRYQKEWLAWALKQENSDTRGGILADEMGMGKTIQAIALVLAKRELMQSSSAPAEPILSHSPSLSGILPAIKGTLVICPVVAVTQWVNEIDRFTIKGSTKVLVYHGARRGKSIEQFLDYDFVITTYSTVESEYRKFMMPPKEKQSRQVKKKTEVTRGMYKEGVSKMSCSENELSMDAEDANATHRGMSLLHAVKWLRIILDEAHYIKSRHSNTAKAVLALESSYKWALSGTPIQNRVGELYSLVRFLQITPYSFYLCMDCDCRTLDHSSKQCPDCSHSSVRHFCWWNKYVSTPIQSSLSSYDGRGNRAMVLLKHKVLKNILLRRTKIGRAADLALPPRIVSLRRDCLDIKEQDYYESLYNESQAQFNTYVESNTLMNNYAHIFDLLTRLRQAVDHPYLVVYSQAAARQGGHVASNSTAEEQACGICHEPVEDPVVTSCEHRFCKTCLIDFSTALGQVSCPSCSQLPTVDLTSHKDVGYQANKTTIKGXRSSSILXRIQLENFQTSTKIEALREEIRSMVERDGSAKGIVFSQFTSFLDLINFSLNKSGVSCVQLNGNMTMTARDAAIKRFTNDPDCRIFLMSLKTGGVALNLTVASHVFLMDPWWNPAAERQAQDRIHRIGQFKPIRIVRFIIENTVEERILNLQQKKELVFEGIIGGSSDALGKLTEGDLKFLFGT* 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g2025 874 Coils Coil 693 711 - -
Amo07g2025 874 SMART ultradead3 193 465 IPR014001 -
Amo07g2025 874 MobiDBLite consensus disorder prediction 49 81 - -
Amo07g2025 874 PANTHER - 384 710 - -
Amo07g2025 874 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 704 864 IPR001650 -
Amo07g2025 874 Pfam Zinc finger, C3HC4 type (RING finger) 620 659 IPR018957 GO:0046872
Amo07g2025 874 PANTHER - 138 341 - -
Amo07g2025 874 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 210 447 IPR014001 -
Amo07g2025 874 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 138 341 - -
Amo07g2025 874 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 384 710 - -
Amo07g2025 874 SUPERFAMILY RING/U-box 613 663 - -
Amo07g2025 874 CDD SF2_C_SNF 702 829 - -
Amo07g2025 874 Gene3D - 171 540 IPR038718 -
Amo07g2025 874 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 391 873 IPR027417 -
Amo07g2025 874 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 521 IPR027417 -
Amo07g2025 874 Gene3D - 543 872 IPR027417 -
Amo07g2025 874 Coils Coil 691 691 - -
Amo07g2025 874 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 711 871 - -
Amo07g2025 874 CDD DEXDc_SHPRH-like 197 521 - -
Amo07g2025 874 SMART helicmild6 735 818 IPR001650 -
Amo07g2025 874 Pfam Helicase conserved C-terminal domain 704 818 IPR001650 -
Amo07g2025 874 ProSiteProfiles Zinc finger RING-type profile. 620 660 IPR001841 -
Amo07g2025 874 MobiDBLite consensus disorder prediction 1 113 - -
Amo07g2025 874 ProSitePatterns Zinc finger RING-type signature. 635 644 IPR017907 -
Amo07g2025 874 SMART ring_2 620 659 IPR001841 -
Amo07g2025 874 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 619 672 IPR013083 -
Amo07g2025 874 MobiDBLite consensus disorder prediction 125 146 - -
Amo07g2025 874 Pfam SNF2-related domain 211 596 IPR000330 GO:0005524|GO:0140658
Amo07g2025 874 PANTHER - 711 871 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g2025 Amo-Chr7 62349017 62355560 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g2025 113 874 RAD5 or RAD16-like Gene Family AT1G05120 62.391 0.0 995
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Amo07g2025 SNF2_N 3.5e-51 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g2025 K15083 - gmx:100786366 1149.04