Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g1998 ATGGCATACCATAACCACCACCTCTCTCAAGACCTTTCACCACTTCACCACCAACATTTCAGTGACCAACAGCAACCTCAACCGCTCTCAGATAACACTGCTATACTTTCCGACCACCTCTCCCCCACTGACCCCACCGCCAAATCCCCCTCCGATCCTCACCCCAACTGGCTCAACAACGCCCTTCTCCGCACCCACTACACCAACAACGATACCAACGCCACCAATTTTCTCAACCTCCACACCGCCGCCTCTGCTTCTGACTCCTCCGCCGCCGCCGCCGCAGCTGCTTCACAATCCTCCGCTCAGTGGCTCGCCCGCCCTGTCCTCCACCGCAACCACAGCGAGGTCATCGACGACGTCGCCCCCCTGTCCAACAACGAATCGCCTGATATGAAGGTTGCCGGCGACGGCAAGGGGGAGGTGGRGACTGTGGAMAGCGGCGGCGAGGGCGGAGGTGGGTTGGTGAACTGGCAGAATGCTCGGTACAAGGCGGAGATTCTGTCACACCCGCTTTACGAGCAGCTTCTGTCGGCACACGTGGCGTGCCTGCGGATCGCCACGCCGGTGGACCAGTTACCGAGGATCGACGCTCAGTTGGCTCAGTCCCAGAATGTGGTGGCCAAGTACTCTTCCTTCGCTCACGCTCCTCTCGGCGATGACAAAGAGCTCGACCAGTTCTTGTCACACTATGTTTTGTTGCTCTGTTCCTTCAAAGAACAACTCCAACAACATGTTCGTGTCCATGCAATGGAAGCAGTAATGGCTTGCTGGGAGATTGAGCAATCCTTACAAAGTCTAACAGGAGTTTCGCCAGGGGAAGGTACCGGAGCAACAATGTCCGATGATGAAGATGACCAAGTAGACAGTGATGCCAATCTGTTTGATGGTGGTTTGGATGGTTCTGATAGCATGGGATTTGGCCCTCTTGTTCCAACAGAGAATGAGAGATCCCTTATGGAACGTGTAAGACATGAATTGAAGCATGAACTGAAACAGGGTTATAAGGATAAAATTGTGGACATAAGAGAGGAAATTTTGCGCAAAAGACGAGCCGGYAAACTTCCCGGMGACACCACCTCTGTTCTTAAAGCATGGTGGCAATCACATTCCAAGTGGCCTTACCCTACAGAGGAAGATAAGGCAAGGTTGGTGCAGGAAACAGGATTGCAATTGAAGCAGATCAATAATTGGTTCATCAACCAAAGGAAGAGGAACTGGCACAGTAATCCTTCAACTTCTACTTCCTTGAAGAGCAAGCGCAAAAGGTATTCCAATAATCACAATATTTACATGATCCTTCTTTCCAGTCTTAATAATAATAACAAAACTAATAATGCAGGTGATAATAGTGCTGAATGA 1362 0.5088 MAYHNHHLSQDLSPLHHQHFSDQQQPQPLSDNTAILSDHLSPTDPTAKSPSDPHPNWLNNALLRTHYTNNDTNATNFLNLHTAASASDSSAAAAAAASQSSAQWLARPVLHRNHSEVIDDVAPLSNNESPDMKVAGDGKGEVXTVXSGGEGGGGLVNWQNARYKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSSFAHAPLGDDKELDQFLSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDDQVDSDANLFDGGLDGSDSMGFGPLVPTENERSLMERVRHELKHELKQGYKDKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTSLKSKRKRYSNNHNIYMILLSSLNNNNKTNNAGDNSAE* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g1998 453 Pfam KNOX2 domain 218 268 IPR005541 GO:0003677|GO:0005634
Amo07g1998 453 SMART ELK_2 326 347 IPR005539 GO:0003677
Amo07g1998 453 SMART KNOX2_2 214 269 IPR005541 GO:0003677|GO:0005634
Amo07g1998 453 CDD homeodomain 349 410 IPR001356 GO:0003677
Amo07g1998 453 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 47 425 - -
Amo07g1998 453 Pfam ELK domain 326 347 IPR005539 GO:0003677
Amo07g1998 453 MobiDBLite consensus disorder prediction 14 59 - -
Amo07g1998 453 MobiDBLite consensus disorder prediction 122 147 - -
Amo07g1998 453 Gene3D - 347 408 - -
Amo07g1998 453 ProSiteProfiles 'Homeobox' domain profile. 346 409 IPR001356 GO:0003677
Amo07g1998 453 MobiDBLite consensus disorder prediction 268 295 - -
Amo07g1998 453 ProSiteProfiles ELK domain profile. 326 346 IPR005539 GO:0003677
Amo07g1998 453 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 47 425 - -
Amo07g1998 453 Pfam KNOX1 domain 163 204 IPR005540 GO:0003677|GO:0005634
Amo07g1998 453 SUPERFAMILY Homeodomain-like 348 412 IPR009057 -
Amo07g1998 453 Pfam Homeobox KN domain 366 405 IPR008422 GO:0003677|GO:0006355
Amo07g1998 453 MobiDBLite consensus disorder prediction 1 59 - -
Amo07g1998 453 SMART KNOX1_2 161 205 IPR005540 GO:0003677|GO:0005634
Amo07g1998 453 SMART HOX_1 348 413 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g1998 Amo-Chr7 60742264 60746241 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g1998 1 423 Homeobox Transcription Factor Family AT5G25220 67.421 0.0 546
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Amo07g1998 KNOX2 2.2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g1998 - - gmx:100790048 612.068