Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g1979 ATGAAGGCCAAGGAAGGTAAAATTGCCGTGGTAGTGAGAACTGTAACTGATGATATCAGAGTGTATGAAGTTCTTGCATTGAAGGTTACCACACTCATGTTTATAGAGACTGCACGGGCTAGAATAAAGAAGGTTGGTGGTGAATGCTTGACATTGGATCAACTTGCACTTAGGGCACCTCTCGAACAGAACACAGTCCTTCTTAGAGGCCCAAAGAACTCCAAGGAAGCTGTGAAACACTTTGGTCCTGCTCCTGGTGTTCCTCACAACCATACCAAGCCTTATGTACAATCTAAGGGAATGAAGTATGAGAGGGCTAGAGGAGGAGGAGGAACAACAAAGGACTTAGGGTTAAGTTGTATTGTTTCTGTATTTTTCTTCAGTTTTTAG 390 0.4308 MKAKEGKIAVVVRTVTDDIRVYEVLALKVTTLMFIETARARIKKVGGECLTLDQLALRAPLEQNTVLLRGPKNSKEAVKHFGPAPGVPHNHTKPYVQSKGMKYERARGGGGTTKDLGLSCIVSVFFFSF* 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g1979 129 PANTHER 60S RIBOSOMAL PROTEIN L18-1-RELATED 1 109 - -
Amo07g1979 129 SUPERFAMILY Ribosomal proteins L15p and L18e 3 69 IPR036227 -
Amo07g1979 129 Gene3D - 1 112 - -
Amo07g1979 129 PANTHER 60S RIBOSOMAL PROTEIN L18 1 109 IPR000039 GO:0003735|GO:0005840|GO:0006412
Amo07g1979 129 Pfam Ribosomal protein 60S L18 and 50S L18e 3 108 IPR021131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g1979 Amo-Chr7 59139459 59140215 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g1979 1 108 Cytoplasmic Ribosomal Protein Gene Family AT3G05590 75.000 7.62e-58 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g1979 K02883 - tcc:18613591 180.644