Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g1976 ATGAAGTTCTTCCAATTTCCCATTTTTCCATTTATTATTCTGCTAAGTTTCATATTGGTTGTAGCAGCTGACTTGAACTCTGACAAACAAGCACTCCTTGATTTTTCTTCTAATGTTCCCCACCCTCCAAGGCTAAACTGGAGTGCAACTACTCCAATTTGCACATCATGGACTGGGGTGATTTGCAATGCGAATCAAACTCGTGTCATCGGCGTCCACCTTCCGGGGATTGGACTCAAAGGGTTGATTCCATCGAAAACCATAGGAAAACTAGATGCTCTTATAACCCTGAGCCTTCATTCCAATGGTCTTAGAGGAAATCTTCCTTCTGACATTTTCTCCATTCCTTCACTCCAATATGTGCATCTTCAGCACAATAACTTCTCAGGTCTAATCCCTTCTTTCGTGTCTCCGAAACTCGTTGTTTTCGATGTTTCCTTTAACAACTTCTCAGGCAGCATTCCACCAACATTTCAGAATCTTAGACGTCTCACATGGTTGTATCTCCAAAAGAACTCCCTCTCTGGAGTTATCCCTGAGTTCAACCTTCCAATGCTCAAATTCTTGAATCTGAGCTATAACAACTTGAATGGTTCAGTTCCAGATTCCATCAAACAATTTCCTTATACTTCTTTTGTTGGAAATTCTCTCTTATGTGGTCCACCTCTCAATCATTGTTCTGCAATCTCTCCTTCTCTGTCTCCATCTTCTTCTCCCGTTTACCAACCACTTTCTCCAGAAACTAACCAAAATCAAAAGGCTACAGCATCTAAGGAACGCTTCGGCATAGCTACTATTCTTGCTCTTGTAATTGGTGGCTGTGCCTTCCTCTCTCTTTTAGTTCTATTTATCTCTGTATGCTGCTTGAAGAGGAAAAACAGTGAAACGAGTGGAATACTTAAAGGGAAAACATCTTGTGCCGGAAAGACCGAGGTTTCAAAGAGTTTTGGCAGTGGGGTGCAAGCAGCTGAAAAGAACAAGTTGTTCTTCTTTGAAGGCTTTACTAACAGCTTTGACCTCGAAGATTTGTTGAAAGCCTCAGCTGAAGTTCTTGGAAAGGGAAGCTATGGAACAACATACAAGGCCACTCTGGAGGATGGAACAGCAGTAGTGGTCAAGCGGTTGAGGGAAGTTGTGGCCGGAAAGAAGGAGTTTGAGCAGCAGATGGAACTTGTTGGAAGGATCGGAAGACACCCGAATGTCGTTCCCCTTAGAGCTTATTATTACTCCAAAGATGAGAAACTTGTAGTTTATAACTACATGCCTGGAGGCAGCTTGTTTAGCCTTTTGCATGGAAACAGAGGTATAGGAAGAACTCCATTGGATTGGGATTCAAGAATGAAGATTGCATTTGGACTTGCAAAAGGAATTGCATTCATTCACTCTCAAGGAGGTCCAAAGTTCACTCATGGCAACATCAAGTCAACCAATCTTCTCATAACCCAAGAACTCGATGGCTGCATCACCGATGTAGGACTAACTCCTCTAATGAACACCCCTCCAACAATGTCGAGGGCTAACAACTACCTTGCACCAGAAGTTATTGAGTCGAGGAAAATCACCCCAAAGTCTGATGTCTACAGCTTCGGAGTGATCCTCCTTGAATTGCTCACGGGCAAGACTCCACTCGGATACGCTGGATATGAAGACATGGTTGATCTTCCAAGGTGGGTGAGGTCCGTGGTGCGTGAGGAATGGACGGCTGAAGTTTTTGATGTGGAGCTGCTAAGAGGGAATTATGTTGAAGAGGAGATGGTGCAGATGCTTCAGATTGCATTGGCATGTGTGGCGAAGGTTGCAGAAAATAGGCCAAGAATTGATGAAGCTGTTAGAACTATAGAGGAAATTAGGCAGCCTGAGTTGAGGAACCGTACTTCATCGGACTCCGAATCTAATGTGCAAACACCATAA 1911 0.4354 MKFFQFPIFPFIILLSFILVVAADLNSDKQALLDFSSNVPHPPRLNWSATTPICTSWTGVICNANQTRVIGVHLPGIGLKGLIPSKTIGKLDALITLSLHSNGLRGNLPSDIFSIPSLQYVHLQHNNFSGLIPSFVSPKLVVFDVSFNNFSGSIPPTFQNLRRLTWLYLQKNSLSGVIPEFNLPMLKFLNLSYNNLNGSVPDSIKQFPYTSFVGNSLLCGPPLNHCSAISPSLSPSSSPVYQPLSPETNQNQKATASKERFGIATILALVIGGCAFLSLLVLFISVCCLKRKNSETSGILKGKTSCAGKTEVSKSFGSGVQAAEKNKLFFFEGFTNSFDLEDLLKASAEVLGKGSYGTTYKATLEDGTAVVVKRLREVVAGKKEFEQQMELVGRIGRHPNVVPLRAYYYSKDEKLVVYNYMPGGSLFSLLHGNRGIGRTPLDWDSRMKIAFGLAKGIAFIHSQGGPKFTHGNIKSTNLLITQELDGCITDVGLTPLMNTPPTMSRANNYLAPEVIESRKITPKSDVYSFGVILLELLTGKTPLGYAGYEDMVDLPRWVRSVVREEWTAEVFDVELLRGNYVEEEMVQMLQIALACVAKVAENRPRIDEAVRTIEEIRQPELRNRTSSDSESNVQTP* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g1976 636 Gene3D Ribonuclease Inhibitor 26 138 IPR032675 -
Amo07g1976 636 Pfam Protein kinase domain 349 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo07g1976 636 ProSiteProfiles Protein kinase domain profile. 345 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo07g1976 636 PANTHER OS05G0588300 PROTEIN 14 635 - -
Amo07g1976 636 SUPERFAMILY L domain-like 27 224 - -
Amo07g1976 636 Gene3D Phosphorylase Kinase; domain 1 311 420 - -
Amo07g1976 636 Gene3D Transferase(Phosphotransferase) domain 1 421 635 - -
Amo07g1976 636 SUPERFAMILY Protein kinase-like (PK-like) 349 613 IPR011009 -
Amo07g1976 636 Pfam Leucine rich repeat 116 174 IPR001611 GO:0005515
Amo07g1976 636 CDD STKc_IRAK 351 616 - -
Amo07g1976 636 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Amo07g1976 636 PANTHER RECEPTOR-LIKE KINASE 14 635 - -
Amo07g1976 636 Gene3D Ribonuclease Inhibitor 139 228 IPR032675 -
Amo07g1976 636 ProSitePatterns Protein kinases ATP-binding region signature. 351 382 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g1976 Amo-Chr7 59009637 59012543 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g1976 1 634 Receptor kinase-like Gene Family AT5G58300 57.014 0.0 704
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Amo07g1976 Pkinase 2e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g1976 - - aprc:113868460 957.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g1083 17 28671613 28674573 Amo07g1976 07 59009637 59012543 hybridization
Amo07g1976 07 59009637 59012543 Amo10g1757 10 62402071 62404728 PCT
Amo07g1976 07 59009637 59012543 Amo20g2260 20 105308930 105311815 PCT
Amo10g1757 10 62402071 62404728 Amo07g1976 07 59009637 59012543 PCT
Amo20g2260 20 105308930 105311815 Amo07g1976 07 59009637 59012543 PCT