Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g1971 ATGGTTTTCGCTCGACACAAGCCATTCGTGAACCATTTGGAATTGAAACTACCAAATGGACCACCTGATCTATTTACTTGTGAATCTGATTATGTGGATTCATTTTCTGATGTGTTTGGTCCTGCTCCCATTGAAGCTTCAATTGGGAATTTGGTAGTTGCAACAAGTTCAAGTGGAAAGGTTTGCAATGATTATCCTTCTGTCATTCATATCCGCTCACATTCATTACATTCAAGTGGAGCATATATTGATCCATCCTCAGTGCGTAGCAAACTCACTTTACACGAGACAGGTGATGAGTTGGAACTTCTTGCAGAGAAGGAGTATAGAGAAGCAAAGGAAGAACTTGAAGAGTATTCAATTAATGATGATGCTGTAAAGGAAAATAATTTAGAATCTAATGATTGTTGCATGCATTATCAGAGTATTGGAGTTGAGGATTTTGAAGTTTTGAAGGTTGTTGGTCAAGGTGCTTTTGGTAAGGTGTACCAAGTAAGGAGGACTGGTACTTCGGAAATATATGCGATGAAGGTGATGCGCAAGGATAAGATTGTACAAAAAAATCATGCAGAATATATAAAATCTGAAAGAGATATATTGACAAAGGTGGTACACCCTTTTATTGTGCGGCTCAGATACGCATTCCAAACAAAATATAGGCTATACTTGGTGCTTGATTTTGTCAATGGTGGTCATGTTTTCTTTCATCTCTATCGCCAAGGCCTATTCAGGGAGGATTTGGCACGCTTCTATGCTGGAGAGATTGTTTGTGCTGTTTCTCATCTTCATGCAAATGGTATAATGCACAGGGATCTTAAACCTGAAAATATTCTTCTCGATGCAGATGGTCATCTAGTGTTAACGGATTTTGGCCTGGCTAAGGAATTCACGGAGATCGCAAGGTCAAATTCTATGTGCGGAACTTTAGAGTACATAGCTCCTGAAATCTTTATAGGGAAGGGTCATGATAAGGCAGCAGATTGGTGGAGTGTGGGGATTTTGCTATTTGAAATGCTTACAGGGAAAGTTAGTATCCTTGCCTCCTTTTACGGGTGGAAATAG 1062 0.3955 MVFARHKPFVNHLELKLPNGPPDLFTCESDYVDSFSDVFGPAPIEASIGNLVVATSSSGKVCNDYPSVIHIRSHSLHSSGAYIDPSSVRSKLTLHETGDELELLAEKEYREAKEELEEYSINDDAVKENNLESNDCCMHYQSIGVEDFEVLKVVGQGAFGKVYQVRRTGTSEIYAMKVMRKDKIVQKNHAEYIKSERDILTKVVHPFIVRLRYAFQTKYRLYLVLDFVNGGHVFFHLYRQGLFREDLARFYAGEIVCAVSHLHANGIMHRDLKPENILLDADGHLVLTDFGLAKEFTEIARSNSMCGTLEYIAPEIFIGKGHDKAADWWSVGILLFEMLTGKVSILASFYGWK* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g1971 353 ProSiteProfiles Protein kinase domain profile. 148 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo07g1971 353 Coils Coil 102 129 - -
Amo07g1971 353 SMART serkin_6 148 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo07g1971 353 PANTHER SERINE/THREONINE-PROTEIN KINASE ATPK2/ATPK19 6 344 - -
Amo07g1971 353 CDD STKc_AGC 154 342 IPR045270 GO:0004674|GO:0005524
Amo07g1971 353 Pfam Protein kinase domain 148 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo07g1971 353 PANTHER RIBOSOMAL PROTEIN S6 KINASE 6 344 - -
Amo07g1971 353 Gene3D Phosphorylase Kinase; domain 1 146 227 - -
Amo07g1971 353 SUPERFAMILY Protein kinase-like (PK-like) 138 343 IPR011009 -
Amo07g1971 353 ProSitePatterns Protein kinases ATP-binding region signature. 154 177 IPR017441 GO:0005524
Amo07g1971 353 ProSitePatterns Serine/Threonine protein kinases active-site signature. 267 279 IPR008271 GO:0004672|GO:0006468
Amo07g1971 353 Gene3D Transferase(Phosphotransferase) domain 1 228 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g1971 Amo-Chr7 58946092 58949463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g1971 7 348 AGC Kinase Gene Family AT3G08720 62.391 6.01e-140 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC-Pl Amo07g1971 Pkinase 3.5e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g1971 K04688 - gmx:100803509 440.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g1086 17 28753195 28756985 Amo07g1971 07 58946092 58949463 hybridization