Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g1962 ATGGGGAGGAAAAAAAGTAAACCTCATCGATCAGGGGGGTTAATAGTTGAAACAAATTCTACTGCTGAAGCAGAATTGGATAAGCAGAATGTTGAAGGGACAAGTAAAGGAGGAAATGATGATTTTGTTGAAGTTGATATACCCTATTTTGTTGAAGTTGATCGGTCTGGTTGGTTGTCAGGTGAGCACCTTGATGTTTCTGAGGTTGTCTTGAGGGATTTAAATTTGAGAGAAGGGTTTTCTGGTTTTGAACTGTGTGAGGATTTTTACCAGGATCCACGGTACTTGTTGAGATTTCGAGTGTCTAATGTCAATAATGTTCTTAGTCGAATCAAGTTAGGTCATTGGCCCGTGTTACCCTATACTGATATTCATCTAGAGTTTGTGAAAAGGGATGCAATAGACAATTTGGAACAATGTACCGTGCTGTTGTCTGGGATTTTTGATGGAACGGATGAAGGTGTTTCTGGCCTTGTTCACTTGGCAAGTTTGAAATTTTTCACATTGAGGCCAGTTCTTGGGATTAGGATTTCGGAAGATATTTCTTCTCTCAGGGTAAGAGTTGAAATACTAAAGTGTGCCTTTGATGCTTGTGAGTCACTTCTTGATGTGTCTAGGCAACTATGGAAAAGGAGTATGATGAATGTCATGTCTTGGCTACGTCCAGAAATAGTAACTTCAGAAGTTAGGTATGGATTTGGTAGCTGTATGAAAATGGAAGTTGATCCACAGGCAGAGACCGGAAATAACACATCCAGCAACAGAAAACACACAAGATTTGATCCTGCTGGTTTTTATGAAGCCATTAAGCCTTCAAAATCTGAGCCAATGCTTGAAGATGACATACCTGAGTTACTTCCTGAACTGAGGCCTTATCAACGACGTGCAGCTTTCTGGATGGTTGAACGGGAGAAACAAATGGAAGAAAGTCAGCGTGAAAGAGAAAGAATTCAGTTTCATTCTCCATTATGCATGCATTTGGATTTTCTGGATACAAGTACTAAAATGTTTTTCAATCCATTCAGTGGGAATATTTCTTTGTGCCCGGAGACATCTTCGCCTTATGTATTTGGAGGCATTCTTGCTGATGAGATGGGCTTGGGAAAAACTGTTGAATTACTTGCTTGCATCTTTGCTCACCGGAGATCAGCATCTGAAAGTGATATACTAGTTGAACCAGTGCCTCAAGTTAATGAAGACCAAAATGTCACTTTAAAAAGACTCAAAAGGGAGCGTGTGGAGTGTATATGTGGATCTGTGAGTGAAAGTCTCAAATATGAAGGACTATGGGTTCAATGTGACATTTGTGATGCTTGGCAGCATGCTGATTGTGTTGGTTATTCAGCTAGAGGAAAATCACTGAAATCAAGACATGGATGTGAAGGCAAGACATATAAAACCACAATAGCTGTAAGGGATGGTGAATATGTATGTCAGATGTGCTCTGAACTAATACAAGTGACTGAATCTCCCATTGCATCGGGTGCCACTCTTATTGTCTGCCCAGCTCCTATTTTGCCCCAGTGGCATAATGAAATTATACGCCATACGCGCTCGGGATCCTTGAAAACTTGTATTTATGAAGGCGTGCGGGAGACTTCTTTATCCAACACATCTATAATGGATATCAGTGAACTCGCCACTGCTGACATTGTGTTAACTACCTATGATGTGCTTAAAGAGGATTTATCCCATGATTCTGATAGACATGAAGGTGATCGACACTTTTTGAGATTTCAAAAGAGGTACCCAGTTGTCCCAACTCTTCTCACCAGGATATATTGGTGGAGGGTTTGTTTGGACGAGGCTCAAATGGTGGAAAGTAATACTGCTGCTGCCACTGAAATGGCTCTAAGACTCCATTCTAAGCATCATTGGTGCATAACAGGAACCCCAATTCAGCGCAAGCTTGATGATTTATATGGGCTGCTAAGGTTTCTTAAAGCTAGCCCTTTCAATACATACAAGTGGTGGACTGAAGTTATTCAAGATCCTTATGAGAAGGGAGATATGGGAGCTATGGAATTTACACACAGAGTTTTCAAACAAATCATGTGGCGTTCTTCTAAAGAACATGTTGCAGATGAATTGGACCTTCCGTCTCAGGAGGAGTGTCTCTCTTGGCTTACACTCTCACCAGTAGAAGAGCACTTTTATCAGAGGCAACATGAAACCTGTGTCATAGATGCCCATGAAGTTATTGAAAGTTTGAGAAATGATATCCTTAATAGAAAAGACCCAGGTTCTGCATCTTTAAATAGTTTGTCAGATTCTTTAATCACTCACTCAGAGGCAGGGAAGCTACTGAATGCTCTGCTGAAACTTCGTCAGGCTTGTTGTCACCCCCAAGTTGGGAGTTCTGGTCTGCGTTCCCTCCAGCAGTCACCTATGACCATGGAGGAAATACTAATGGTTCTTATAAGCAAGACTAAGGTAGAAGGTGAGGAAGCTCTTAGAAGGTTAGTTGTTGCTCTGAACGGGCTTGCAGCAATAGCAACAATACAAAACGAATTATCTCAAGCTGCATTGCTGTACCACGAAGCTCTGACGTTGGCTGAAGAGCATTCTGAGGATTTCCGCTTGGATCCTTTGTTGAATATCCATGTTCATCATAATCTTGCCGAAATGCTCCCACAGGCTGCAGACCTTGCCCTGAGAGTGTCCTCTAAAGAAAAGCAGTTCTCTCGAACATCCAGAAAGCATTTTATTGACAAGGTTGATCATTGTCTTTTGAAGAGGCAAAAAGTAAGTGGCTGTGATGACACGAAATTTTCAGCGGCTTCGGTAGAACTATCCAATTCTGCATCCAGCCTTTCAGAAGATGACTTAAATGAGAATCAGGATGTTGATGATGTAGCTGTCTGCACTGTCAAATCTCTGACAGCAGAATGTGAAGATTTGAAGCAGAAATACTTATCCGTGTTCAGTACAAAGCTATGTGCAGCTGAACAGGAGTTTCAAAACTCATACATGCAGGTTAGTAATGGATTTAGTGACAGCAAAGCAGATCAAAATATGTTTTGGTGGCTAGAAGCACTTCATCATGCTGAACAGAACAAGGATTTCTCAGCCGAGTTGTCTAGAAAGATTGAAGAAGCGATCTCAGCAGCTGCAAATAGTTCAAAGTCATCAAAAATAGCTGCTCGTTTTCGGAGCATATCATCTCTGAAGTATCAAATTCAGACAGGCTTGGATCAGTTAGAGACCTCTCGGAAAGGTCTATTAGATCGACTGCTAGAAATTGACCAAACGATGGAACAACCAAATGAAGAAGATATTGACCGTATGGGTAAATGTCAAACTTGCCAACCTAATTGTGATGGTCCCCCATGCATTCTGTGTGAACTAGATGAACTCTTCCAGGATTATGAAGCAAGACTATTTGTTCTTAAGAATGAACGTGGCGGAATAATTTCATCCGCTGAGGAGGCAGTAGATCTTCAGAAGAAGAATTTCGCATTGAATCATTTCCTCTCAAAGCTATCAAAATCTAATCACAGAGCAACAGCATCTCAAATTGATAATGAAGAATCAAAGAAAAGGAATGTTGGACAGAGAGTTGTGGTTTCAAGATCAGCATCTGAATTGGAGCTTATTCTCGGTGTTATAAAGAACTATTGCAAGGGTCGATTGGGAAGGGACATTGTCACAGCAGCAACCAAGCATTTACATGTTTTTGAGGGAATGAGGAAGGAGTTTGGCTATGCGAGATCTTTAGCTCTAGCTCAAGCTCAGTACCTACGGGCCCATGATGAAATAAAGATGGCTGTTTCCCGTTTGCACTTAAGGGCAAATGAGGATGATAAATCTCTTGATGCTTTAGGTGAAGATGAGCTATTTGCAGCTAGCTCAAACTTTTCGCATGATAAGTTTATGTCGTTGAACATGTTGTCACAGATAAAAGGAAAGCTCCGCTACTTAAAGGGTTTGGTAGAATCTAAGCAAAAGCTGCCATTGGGAAGTCCAGATAGTTCTTCATTAACTCAAGAGATAACTGCATTGCCAAACTCTACAGAAGAGAGGGGTGCAGTCATATTTAAAGCTGACGAAGAAACATGTCCAATTTGCCAAGAAAAGCTTGGCAGTCAGAAAATGGTATTTCAATGTGGGCATGTTACGTGCTGCAAATGTTTATTTGCTATGACTGAGAATAGGCTTCAACATAGCAAGATTCACAATTGGGTTATGTGCCCAACATGTCGACAGCATACAGATTTTGGAAGCATTGCTTATGCTGTTGATGCACAGAAGGAATCTTCTAATTCTGTAACACCTAATACACTTGACAACTGTGAAAAAAGTGAAGCATCCATGACTGTCAAAGGCTCATATGGAACTAAGATTGAAGCTATCACTAGAAGAATCTTGTGGGTAAAGGCTACAGATCAAAAAGCAAAAGTTCTTGTGTTTTCTAGTTGGAATGACGTACTTGATGTATTGGAGCATGCCTTTGCTGCAAATGACATTACATTCATCCGCATGAAAGGAGGCAGGAAAGCACAAGTTGCTATCAGTCAATTTAGAGGACACGAGAGTGGCAAGAAAGGTGAGAGGCCAGTGTCAAAATCTATTCAGGTGTTATTGCTTTTAATCCAACATGGAGCCAATGGCCTCAATCTCTTGGAAGCACAGCATGTGGTCCTTGTAGAGCCATTACTCAATCCGGCTGCTGAAGCACAAGCGATCAGTCGTGTACATCGTATCGGCCAAAAGAACAAGACCCTCATTCATCGTTTCATTGTCAAAGACACTGTAGAAGAGAGCATATACAAGCTAAACAGAGGTAGGAGCAATCATTCATTCATTAGTGGGAACACAAAAAATCAAGATCAACCTGTTTTGACTCTGAAGGATGTGGAATCCTTACTATCAAGAGCCCCACTAATAATGCCAGAAGCTGATGAAAATGGCAACACAAATTCAAATCTAAGGCATTTGCCGCCATCAATGGCTGCCGCGATTGCCGCTGAGAGAAGAGTCAATGAGCAAACATGA 4995 0.4124 MGRKKSKPHRSGGLIVETNSTAEAELDKQNVEGTSKGGNDDFVEVDIPYFVEVDRSGWLSGEHLDVSEVVLRDLNLREGFSGFELCEDFYQDPRYLLRFRVSNVNNVLSRIKLGHWPVLPYTDIHLEFVKRDAIDNLEQCTVLLSGIFDGTDEGVSGLVHLASLKFFTLRPVLGIRISEDISSLRVRVEILKCAFDACESLLDVSRQLWKRSMMNVMSWLRPEIVTSEVRYGFGSCMKMEVDPQAETGNNTSSNRKHTRFDPAGFYEAIKPSKSEPMLEDDIPELLPELRPYQRRAAFWMVEREKQMEESQRERERIQFHSPLCMHLDFLDTSTKMFFNPFSGNISLCPETSSPYVFGGILADEMGLGKTVELLACIFAHRRSASESDILVEPVPQVNEDQNVTLKRLKRERVECICGSVSESLKYEGLWVQCDICDAWQHADCVGYSARGKSLKSRHGCEGKTYKTTIAVRDGEYVCQMCSELIQVTESPIASGATLIVCPAPILPQWHNEIIRHTRSGSLKTCIYEGVRETSLSNTSIMDISELATADIVLTTYDVLKEDLSHDSDRHEGDRHFLRFQKRYPVVPTLLTRIYWWRVCLDEAQMVESNTAAATEMALRLHSKHHWCITGTPIQRKLDDLYGLLRFLKASPFNTYKWWTEVIQDPYEKGDMGAMEFTHRVFKQIMWRSSKEHVADELDLPSQEECLSWLTLSPVEEHFYQRQHETCVIDAHEVIESLRNDILNRKDPGSASLNSLSDSLITHSEAGKLLNALLKLRQACCHPQVGSSGLRSLQQSPMTMEEILMVLISKTKVEGEEALRRLVVALNGLAAIATIQNELSQAALLYHEALTLAEEHSEDFRLDPLLNIHVHHNLAEMLPQAADLALRVSSKEKQFSRTSRKHFIDKVDHCLLKRQKVSGCDDTKFSAASVELSNSASSLSEDDLNENQDVDDVAVCTVKSLTAECEDLKQKYLSVFSTKLCAAEQEFQNSYMQVSNGFSDSKADQNMFWWLEALHHAEQNKDFSAELSRKIEEAISAAANSSKSSKIAARFRSISSLKYQIQTGLDQLETSRKGLLDRLLEIDQTMEQPNEEDIDRMGKCQTCQPNCDGPPCILCELDELFQDYEARLFVLKNERGGIISSAEEAVDLQKKNFALNHFLSKLSKSNHRATASQIDNEESKKRNVGQRVVVSRSASELELILGVIKNYCKGRLGRDIVTAATKHLHVFEGMRKEFGYARSLALAQAQYLRAHDEIKMAVSRLHLRANEDDKSLDALGEDELFAASSNFSHDKFMSLNMLSQIKGKLRYLKGLVESKQKLPLGSPDSSSLTQEITALPNSTEERGAVIFKADEETCPICQEKLGSQKMVFQCGHVTCCKCLFAMTENRLQHSKIHNWVMCPTCRQHTDFGSIAYAVDAQKESSNSVTPNTLDNCEKSEASMTVKGSYGTKIEAITRRILWVKATDQKAKVLVFSSWNDVLDVLEHAFAANDITFIRMKGGRKAQVAISQFRGHESGKKGERPVSKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFIVKDTVEESIYKLNRGRSNHSFISGNTKNQDQPVLTLKDVESLLSRAPLIMPEADENGNTNSNLRHLPPSMAAAIAAERRVNEQT* 1665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g1962 1664 SUPERFAMILY RING/U-box 1348 1405 - -
Amo07g1962 1664 Gene3D - 346 399 IPR038718 -
Amo07g1962 1664 Pfam Zinc finger, C3HC4 type (RING finger) 1353 1400 IPR018957 GO:0046872
Amo07g1962 1664 SMART helicmild6 1478 1569 IPR001650 -
Amo07g1962 1664 Gene3D - 1415 1658 IPR027417 -
Amo07g1962 1664 ProSitePatterns Zinc finger PHD-type signature. 415 481 IPR019786 -
Amo07g1962 1664 SMART ultradead3 285 658 IPR014001 -
Amo07g1962 1664 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 268 686 IPR027417 -
Amo07g1962 1664 MobiDBLite consensus disorder prediction 1 21 - -
Amo07g1962 1664 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1450 1620 IPR001650 -
Amo07g1962 1664 SUPERFAMILY FYVE/PHD zinc finger 411 484 IPR011011 -
Amo07g1962 1664 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1340 1414 IPR013083 -
Amo07g1962 1664 Pfam Helicase conserved C-terminal domain 1447 1569 IPR001650 -
Amo07g1962 1664 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 487 650 IPR014001 -
Amo07g1962 1664 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 411 463 IPR013083 -
Amo07g1962 1664 SMART ring_2 1353 1400 IPR001841 -
Amo07g1962 1664 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 1 1647 - -
Amo07g1962 1664 ProSiteProfiles Zinc finger PHD-type profile. 412 484 IPR019787 -
Amo07g1962 1664 Gene3D - 464 709 IPR038718 -
Amo07g1962 1664 ProSiteProfiles Zinc finger RING-type profile. 1353 1401 IPR001841 -
Amo07g1962 1664 CDD DEXQc_SHPRH 289 688 - -
Amo07g1962 1664 Pfam SNF2-related domain 292 784 IPR000330 GO:0005524|GO:0140658
Amo07g1962 1664 SMART PHD_3 414 482 IPR001965 -
Amo07g1962 1664 CDD SF2_C_SNF 1444 1580 - -
Amo07g1962 1664 CDD PHD_TCF19_like 416 481 - -
Amo07g1962 1664 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 692 1625 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g1962 Amo-Chr7 58605631 58619950 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g1962 489 782 RAD5 or RAD16-like Gene Family AT5G22750 30.435 7.65e-37 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Amo07g1962 SNF2_N 2e-88 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g1962 K15710 - gmx:100776659 2707.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g1094 17 29127298 29141386 Amo07g1962 07 58605631 58619950 hybridization