Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g1959 ATGCTGCGACATCCAAACGTGGCCTCCACACTAAGGAGCAGAACAACACTGTTGCTACCTCCACTAACAATGCTCTCGCCGTCGCCGCCGCCTTCCGCCGCGTCCCCCACCAAAACAACGCTACCATCCTCCCTCTCCACCGCACCTTCCAAGCCCTCATTCCACCACTTCCCTATCTCTTCCACATCCTCGAACTCTCACACACTTCACAGCATAATGTCCCGTTCCAATTCCAAGTGGTTCTTCTCCTCCGGGAACACCACAACACCGATTGCCATATCGGAAATGACCCGAACCGAAAATCCGGAACCCGAATCCGACGTGGATGAATCTCTGGTGGTGGTTTCGTTCTACAAGTTCGCGGATTTCTCTGACCATGCAGCTATGAGGAAACCCTTGAAGGAGCTTTGCCAACAACTTCGTGTTTCAGGCGGTATTATTCTTGCGCCTGAAGGGATCAATGGCAGCATATGTGGCACTCGGGAGTCGGTGGAGAAAGTTCTTGCATTCATACAAAGTGATGACCGATTGAAAGGGCTAAGACGGGTTGAATCGCCTGTTAGTCCCGAGGAGGAAGCCATTCACCATGGACACAGTGCCAGTTCTCCTCTTGCTGCAGGGGAAGATGCACCTTTCCGGTGGGATCATGTGAGGGTCAAATTGAAGAAAGAGATTGTCACTCTTGGGATGCCTAGCGTATCACCTATTGAAAAGGTTGGGAAATATGTTGGCCCGAAAGAGTGGAATACTTTGATTAGTGATCCAGATACGGTTGTGATTGATGTGAGGAATAACTACGAAACCAGAATAGGAAAGTTTAAAGGAGCAGTTGATCCATGTACTTCATCATTTCGAGAATTCCCCTCTTGGGTGGAGGAGCATTTCCAGCTTACTGGATGTGGGCTTCCGGAAGTTGAGGTAGACAATTCAATCAAAAGTGATGAAAGTGAAATGGAGAATCCAAAACAAAATATGCCAAAACGTGTTGCAATGTATTGCACCGGAGGTATCCGATGCGAGAAAGCAACAAGTCTACTTCTCAGAAAAGGTTTCAAAGAGGTCTATCACCTTGAAGGTGGAATCCTGAAATATCTTGAGGAAGTTCCAGAGAAACAAAGCCTCTGGGAGGGTGAGTGCTTTGTCTTCGACAAGCGAGTCTCCGTTGAGCACGGATTGGTGCCAGGAAACTTCAAGCTCTGCTATGGTTGCAAGCAGCCTGTGAGTGATGCTGACATGGAATCCCCTGAGTATGAATATGGAGTTTCTTGTCCTTACTGCTTTTCGTCAAAATCAGAAGAAGAGAAGGAGAGGGCTCGTGCGCGACAACGACAATTTGAGAGATGGGGAATCATAGGTGGTCCGGATAAGGGTCGCCAGCCATCAAGTAAACCGGACAGTGGCTGTGCAAAACCAAACCAGCTTTCACGTTCTGCCTAA 1437 0.4857 MLRHPNVASTLRSRTTLLLPPLTMLSPSPPPSAASPTKTTLPSSLSTAPSKPSFHHFPISSTSSNSHTLHSIMSRSNSKWFFSSGNTTTPIAISEMTRTENPEPESDVDESLVVVSFYKFADFSDHAAMRKPLKELCQQLRVSGGIILAPEGINGSICGTRESVEKVLAFIQSDDRLKGLRRVESPVSPEEEAIHHGHSASSPLAAGEDAPFRWDHVRVKLKKEIVTLGMPSVSPIEKVGKYVGPKEWNTLISDPDTVVIDVRNNYETRIGKFKGAVDPCTSSFREFPSWVEEHFQLTGCGLPEVEVDNSIKSDESEMENPKQNMPKRVAMYCTGGIRCEKATSLLLRKGFKEVYHLEGGILKYLEEVPEKQSLWEGECFVFDKRVSVEHGLVPGNFKLCYGCKQPVSDADMESPEYEYGVSCPYCFSSKSEEEKERARARQRQFERWGIIGGPDKGRQPSSKPDSGCAKPNQLSRSA* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g1959 478 Hamap tRNA uridine(34) hydroxylase [trhO]. 110 410 IPR020936 -
Amo07g1959 478 Gene3D - 100 226 - -
Amo07g1959 478 ProSiteProfiles Rhodanese domain profile. 253 373 IPR001763 -
Amo07g1959 478 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 222 399 IPR036873 -
Amo07g1959 478 Pfam UPF0176 acylphosphatase like domain 113 225 IPR040503 -
Amo07g1959 478 PANTHER THIOSULFATE SULFURTRANSFERASE/RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 2 108 459 IPR020936 -
Amo07g1959 478 MobiDBLite consensus disorder prediction 8 22 - -
Amo07g1959 478 MobiDBLite consensus disorder prediction 185 205 - -
Amo07g1959 478 MobiDBLite consensus disorder prediction 437 478 - -
Amo07g1959 478 Gene3D - 227 406 IPR036873 -
Amo07g1959 478 PANTHER THIOSULFATE SULFURTRANSFERASE/RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 2 108 459 - -
Amo07g1959 478 SMART rhod_4 243 370 IPR001763 -
Amo07g1959 478 MobiDBLite consensus disorder prediction 1 49 - -
Amo07g1959 478 CDD RHOD_YceA 240 366 - -
Amo07g1959 478 Pfam Rhodanese-like domain 246 366 IPR001763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g1959 Amo-Chr7 58579797 58583595 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g1959 111 472 Sulfurtransferasese or Rhodanese AT2G40760 77.112 0.0 583
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g1959 - - gmx:100784854 647.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g1097 17 29322450 29326109 Amo07g1959 07 58579797 58583595 hybridization