Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g1955 ATGAAGAAGAATACCCTTTGTTCTGAAAATAACGATGTCTCATCGAAGAAGAAAAGAATAATAATCAAAGAACTTGTTCAAGGTCAAGAAGCTGCGACTCAGCTGAAGCTTCTTCTTCAGAACCCCATTGGCGACACTTCTCTCTCAGCTGAAGAGCTTCTTGGCAATGTCCTTACTTCCTTCGCTGAAACCCTTTCTCTTCTTGCTTCTAATCATTCCCAGGAACAACCTTGTCGCCATGATCCGTCGCGGTCGTCGGCAGATCCCAGCGATGATTATTCCGGAGGAGAATCTCATTGTATGACTCCGCCCAAAAAAGTTGGAAGAGGCTGCTACAAAAGAAGGAGGACTGAACACACATGGACCACAATCTCTCCCACTGCAGATGATAATCATGCATGGAGGAAATATGGAGAGAAAGAAATTCAGAATTCTAAATTTCCTAGGAGCTACTTTAGATGCAGTAGAAAGTATGATCAAAATTGCCGGGCAATCAAACATGTGCAGAGGACACAAGAGAATCCTTGTATGTACCAAATCACATACATTGGCATGCACACGTGCAAAGCCACCCCTGATGATGCTCCATGTTTGGTCATGGTGGATTGTAAGGTACCAACTATAAAACAAGACACTACTCCTCCTCCTCCTTCTATGTTGTCAGATTTGAAGGATATTATCGAACCATACAAGCCTTCCATTATTATGCCACCAAGTATGGTATCTAATGATAATGCAAACAATGTATATCCATGTCCAAGCTCTCAATGTTCGGATATGGATTTTGGGGTGGATTTAGTTCATTTTAGGGAATCATGA 819 0.4212 MKKNTLCSENNDVSSKKKRIIIKELVQGQEAATQLKLLLQNPIGDTSLSAEELLGNVLTSFAETLSLLASNHSQEQPCRHDPSRSSADPSDDYSGGESHCMTPPKKVGRGCYKRRRTEHTWTTISPTADDNHAWRKYGEKEIQNSKFPRSYFRCSRKYDQNCRAIKHVQRTQENPCMYQITYIGMHTCKATPDDAPCLVMVDCKVPTIKQDTTPPPPSMLSDLKDIIEPYKPSIIMPPSMVSNDNANNVYPCPSSQCSDMDFGVDLVHFRES* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g1955 272 ProSiteProfiles WRKY domain profile. 123 191 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo07g1955 272 SUPERFAMILY WRKY DNA-binding domain 125 190 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo07g1955 272 PANTHER WRKY DNA-BINDING TRANSCRIPTION FACTOR 70 11 192 - -
Amo07g1955 272 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 11 192 IPR044810 GO:0003700
Amo07g1955 272 SMART WRKY_cls 128 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo07g1955 272 Pfam WRKY DNA -binding domain 129 189 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo07g1955 272 MobiDBLite consensus disorder prediction 72 101 - -
Amo07g1955 272 Gene3D WRKY domain 115 191 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g1955 Amo-Chr7 58526164 58531104 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g1955 12 197 WRKY Transcription Factor Family AT3G56400 38.384 4.50e-38 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo07g1955 WRKY 4e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g1955 - - ahf:112762555 478.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g1100 17 29414176 29419242 Amo07g1955 07 58526164 58531104 hybridization
Amo07g1955 07 58526164 58531104 Amo08g0431 08 8330606 8331970 PCT
Amo08g0431 08 8330606 8331970 Amo07g1955 07 58526164 58531104 PCT