Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g1934 ATGGGGGGTGGTTGGAGAAGAGCGTTCTGCACCCGTAACCCAGAATCCACAATTTTACATAACCAACACCGAAGCCAATCCCCAACCACCTGCGTCAGATTGAGCTTCCTCTCAGTCTCAGACACCGCAGATTCAACATCAAATCCATCCACTCCACGCTCCCCTAGCTTCAAGCTATCCCTGTTCAGAAACAGCTTCAAATTCAGAAGTAGTTGTGGAATCTGTTTGAACAGCGTGAAGACGGGGCTGGGAACGGCAATTTACACTGCGGAATGCGGTCATGCTTTTCACTCCCCCTGCATCGTCGGCCACGTCAGCAGCAACAACACGTGCCCCGTCTGCAACGCCACGTGGAAAGTCGTTCCTGCCCTTCCGCAACAAAACGACGTCGTAACCACCAAAATATTCGAAGCGAAGAAGCAATCCGATTCGGTAAGACCATACGACGACGATGAGCCTCTCCCTTCTCCCTTCTCCGGTTGCCAAATCGCTCCGATTCCGGAGGCCGACGAAAACAACGACGACGAAGACCAAAACGACGTTTTCCAGGGCTTTTTCGTAAATCCATCAAAGCCTCCAATGATAACGAAGGACGCTGATTCAAGGAATGTACGGGTGAAGCTGATGCCAGAGTGTGCTGTCATAACGTCGTCACAGAGCCACGAGACTTATGCTTTGGTTCTAAGAGTCAAGGCTCCGCCACCGCCATCGTGKAGTCAGATCGGTGCMTCGCCACCGGTGGATCTTGTCACGGTTGTCRACGTCGGCGCCGGCATGAGCGGCACGAAGCTTCATATGCTGAAGCGYGCGATGCGTTTGGTTATCTCATCGCTCGGCTCCGTCGACCGGCTCGCAATCGTGGCTTATTCGGATTCATCGAAACGGTTGATGCCGCTGCGGAGAATGACGGCGCAGGGACAGCGGGTGGCTCGSCGCATCGTCGACCGCCTCATCTCCGGSCGASAAATAGCCGCCTCAGGSGGTGTAGAAGCTCTGAGGAAAGCAGCGAAGGTTCTAGAAGACCGAAGGGAAAGAAATCCGTTGGCCTCCGTTGTTCTCTTCTCAGAAACAAGTAATTGGAAGMATCAACGAGAAAGCTTCGGCTTYAGCCACGTGTCTTCCCGGTTYACCTTTATAGAAGTCCCGGTTCAATCGTTTGGGTTCGGGAAAAGAACCKKGTTCGGCTTCCAACCGGATGAGGATCATTKTGCGAAGCGCATTGAGGAATTATTCAGCGTAACGGTGCATGATTTAACAGTTCAGCTCGRAGTTTCATCGCATCATGCTGAGATCAGAGATGTTTATTCCTGTAATAATGGACGGCCCACAKCGCTTGGCTCTGAAGCCTTTACGATTGGCGATTTGTACGCTGAAGAAGAGAGGGAACTGTTGGTGGAGTTGAGAGTGGCCACGTCAGCATTGGGAAGCCATCACGTGATGAACGTGAAGTGTGTCTATAAAGATTCGGTGAAACAGGACACTGTGTGCGGTAGGGAGCAAGCGCTTCCAGTGGCGCTACGGCTTGGTGGCAGAGCCGAGAGGCTTAGGAATGTGTTTGTGACGAGCCGAGCCATTTCCAAGTCAAGGAAACTGTTGGATCAGAATGAGTTTTCYAATGCTTATTGTGTGGTGGYTTCGGCTCGAGAGCTTTTAGCTCAGTGTGGCTCGGCTTCAGTGGACGAGTATGTGCGTGGCTTGGAGGCTGAGCTGGCAGAGATTCAGTGGCAGAAAGCACAGTATGAGAGGCAAGGGAGGGCGGTGGATGAGAGTGGCGAGGAGGCATTGACACCGACTTCAGCTTGGAGAGCAGCTGAGAAGCTGGCTAAGATGGCAACAATGAAGAAGTCATTGAATAGAGTCACTGACTTGCACGGCTTCGAAAATGCTAGGTTCTAG 1896 0.5185 MGGGWRRAFCTRNPESTILHNQHRSQSPTTCVRLSFLSVSDTADSTSNPSTPRSPSFKLSLFRNSFKFRSSCGICLNSVKTGLGTAIYTAECGHAFHSPCIVGHVSSNNTCPVCNATWKVVPALPQQNDVVTTKIFEAKKQSDSVRPYDDDEPLPSPFSGCQIAPIPEADENNDDEDQNDVFQGFFVNPSKPPMITKDADSRNVRVKLMPECAVITSSQSHETYALVLRVKAPPPPSXSQIGASPPVDLVTVVXVGAGMSGTKLHMLKRAMRLVISSLGSVDRLAIVAYSDSSKRLMPLRRMTAQGQRVARRIVDRLISGRXIAASGGVEALRKAAKVLEDRRERNPLASVVLFSETSNWKXQRESFGFSHVSSRFTFIEVPVQSFGFGKRTXFGFQPDEDHXAKRIEELFSVTVHDLTVQLXVSSHHAEIRDVYSCNNGRPTXLGSEAFTIGDLYAEEERELLVELRVATSALGSHHVMNVKCVYKDSVKQDTVCGREQALPVALRLGGRAERLRNVFVTSRAISKSRKLLDQNEFSNAYCVVXSARELLAQCGSASVDEYVRGLEAELAEIQWQKAQYERQGRAVDESGEEALTPTSAWRAAEKLAKMATMKKSLNRVTDLHGFENARF* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g1934 631 SMART ring_2 72 114 IPR001841 -
Amo07g1934 631 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 21 631 - -
Amo07g1934 631 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 120 IPR013083 -
Amo07g1934 631 Gene3D von Willebrand factor, type A domain 249 415 IPR036465 -
Amo07g1934 631 PANTHER E3 UBIQUITIN-PROTEIN LIGASE WAV3 21 631 - -
Amo07g1934 631 Pfam RING-like zinc finger 72 101 IPR001841 -
Amo07g1934 631 Pfam von Willebrand factor type A domain 251 355 IPR002035 -
Amo07g1934 631 MobiDBLite consensus disorder prediction 142 183 - -
Amo07g1934 631 Coils Coil 563 583 - -
Amo07g1934 631 SUPERFAMILY RING/U-box 66 123 - -
Amo07g1934 631 ProSiteProfiles Zinc finger RING-type profile. 72 115 IPR001841 -
Amo07g1934 631 CDD RING-H2 72 115 - -
Amo07g1934 631 SUPERFAMILY vWA-like 245 356 IPR036465 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g1934 Amo-Chr7 57915639 57917829 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g1934 41 130 C3H Transcription Factor Family AT2G18670 25.556 3.83e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g1934 - - gmx:100819417 640.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2970 17 132095426 132098598 Amo07g1934 07 57915639 57917829 hybridization