Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g1928 ATGTCTCCGCTACTCGGCGTGGTGGGGGATGAGGAAGGTCAGCAGAGCCATGTGACTCTGTTGGTTTCTTCCTCATCCACCATGGAAAGTGTGAATTGTCTGAACAGCTCGAAACTGAAGGAGCGAAACTACATGGGATTGTCTGATTGTTCTTCTGTGGATAGCTCAGTTCCCTCATTCTCTGATGAGACTAAAAGCAATCTGAACCTCAAAGCTACTGAGCTGAGGTTGGGGCTTCCGGGATCTCAGTCTCCTGAAAGAGACTCAGATCTTTGCTTGAGGAGTTCTACTCAATTTGATGAGAAACCTTTGTTTCCTTTGCGTCCTGTAGCTGATGATCATCATTCCTCGTCGAAGCCTGCTCTTTTGGGCAACAAAAGAGGGTTTTCGGATGCAATGACTGGGTTCTCTGAGGAGAAATTGCTTGTTAGTTCGGACGCCAATACAATATTGCCATCTAGGCCTTCTCCTACTGTGGGATTGAAATCGAGCTCAATGCTTGAGAATGCTGCGGCTCAGCAAGCGAAAGTCAATGAAGTAGCAACATCCAAGGTGGGAGAGAGGCCTCATGCTGCCAAAGAAACCAGGCCAAGCCTTAACGATTCCACTGTGAATAATAATAGCAGTGCACCAGCTCCAAAGGCACAGGTTGTAGGATGGCCTCCAATAAGATCTTTTAGGAAAAATTCATTGGCTACTACATCGAAGAATGCTGAAGAAGTAGATGGAAAAATGGCTTCTGGTGCACTGTTTGTGAAGGTAAGTATGGATGGCGCGCCATACTTGAGAAAAGTGGACTTGAAGAATTACTCTGCCTATCCAGAGCTTTCTTCTGCTCTGGAGAAGATGTTCAGCTGCTTCACCATAGGTCAATGTGGATCTCATGGAAATCTTGGGAAGGAAATGCTGAGTGAAACCAAGCTGAAGGATCTACTTCATGGATCAGAATATGTTCTTACTTATGAGGATAAAGACGGTGATTGGATGCTAGTGGGTGATGTTCCCTGGGAGATGTTCATCGAAACATGCAGGAGGCTGAGGATCATGAAGGGCGCTGATGCCATTGGTCTAGCACCAAGAGCCGTCGAGAAAAGCAAAAGCAGGAACTAG 1110 0.464 MSPLLGVVGDEEGQQSHVTLLVSSSSTMESVNCLNSSKLKERNYMGLSDCSSVDSSVPSFSDETKSNLNLKATELRLGLPGSQSPERDSDLCLRSSTQFDEKPLFPLRPVADDHHSSSKPALLGNKRGFSDAMTGFSEEKLLVSSDANTILPSRPSPTVGLKSSSMLENAAAQQAKVNEVATSKVGERPHAAKETRPSLNDSTVNNNSSAPAPKAQVVGWPPIRSFRKNSLATTSKNAEEVDGKMASGALFVKVSMDGAPYLRKVDLKNYSAYPELSSALEKMFSCFTIGQCGSHGNLGKEMLSETKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIETCRRLRIMKGADAIGLAPRAVEKSKSRN* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g1928 369 MobiDBLite consensus disorder prediction 175 216 - -
Amo07g1928 369 Gene3D - 244 363 - -
Amo07g1928 369 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 25 363 IPR003311 GO:0005634|GO:0006355
Amo07g1928 369 Pfam AUX/IAA family 73 360 IPR033389 -
Amo07g1928 369 PANTHER AUXIN-INDUCED PROTEIN 25 363 - -
Amo07g1928 369 ProSiteProfiles PB1 domain profile. 249 351 IPR000270 GO:0005515
Amo07g1928 369 MobiDBLite consensus disorder prediction 196 213 - -
Amo07g1928 369 SUPERFAMILY CAD & PB1 domains 245 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g1928 Amo-Chr7 57479887 57484720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g1928 263 354 B3 DNA Binding Superfamily AT1G19220 30.435 1.18e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Amo07g1928 AUX_IAA 5.3e-91 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g1928 K14484 - gmx:100818881 578.17