Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g1916 ATGTTGGTGGAGAGAAGGCTTCAAAGCTTGGAGATGCAAAGAGAGTGCAAAATGGAGGCAAGTCAATCATCTTCTCCTCCTGTTTTCAACTCGGAAAGGAAGAACAATAATAGATCAAAGAAGGTTGAGGGCCAACCCTCCAAGAATCTAATGGCTGAGAGGAGAAGAAGGAAGAGATTGAATGATAGGCTCTCCATGCTTAGATCAATTGTCCCCAAGATTAGCAAGATGGACAGAACATCTATACTTGGAGACACCATTGACTACATGAAGGAACTACTAGACAAGATCAATACTTTGAAACAAGAAATCCAAGTGGTGGATGATTCAAATGGCATTTTATCCAATGATATACACCCAAATGATATTTTAGTGAGAAATTCTCCCAAGTTTGATGTGGAGAGGAGGAATAATAATGGAGACACAAGAGTTGAGATCTGTTGTGGTGGGAAGCCAGGGATGTTGCTATCTACAGTAAACACTTTGGAAGCATTGGGTCTTGACATTCAACACTGTGTTATAAGCTGTTTCAATGACTTCACAATGCAAGCTTCTTGCTCAGAGGAATTGGAGCAGAAGAGAATGGTGAGTTCTGAAGATATAAAGCAAGCACTGTTTAAGACCGCAGGATATGGAGGGAGATGTTTCTGA 651 0.4086 MLVERRLQSLEMQRECKMEASQSSSPPVFNSERKNNNRSKKVEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLDKINTLKQEIQVVDDSNGILSNDIHPNDILVRNSPKFDVERRNNNGDTRVEICCGGKPGMLLSTVNTLEALGLDIQHCVISCFNDFTMQASCSEELEQKRMVSSEDIKQALFKTAGYGGRCF* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g1916 216 MobiDBLite consensus disorder prediction 15 33 - -
Amo07g1916 216 MobiDBLite consensus disorder prediction 13 58 - -
Amo07g1916 216 PANTHER - 2 216 - -
Amo07g1916 216 Gene3D - 31 111 IPR036638 GO:0046983
Amo07g1916 216 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 216 - -
Amo07g1916 216 SMART finulus 50 99 IPR011598 GO:0046983
Amo07g1916 216 CDD ACT_UUR-ACR-like 142 183 - -
Amo07g1916 216 Coils Coil 90 110 - -
Amo07g1916 216 Pfam Helix-loop-helix DNA-binding domain 50 93 IPR011598 GO:0046983
Amo07g1916 216 MobiDBLite consensus disorder prediction 34 58 - -
Amo07g1916 216 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 44 93 IPR011598 GO:0046983
Amo07g1916 216 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 107 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g1916 Amo-Chr7 57051003 57053153 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g1916 35 216 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 66.667 1.93e-71 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo07g1916 HLH 3.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g1916 - - gmx:100784380 298.516