Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g1880 ATGTCATCAGAAGAAGCAATGCAGTTGCGCATCGAAGACAATCATGTGGTTATGGACAATGGCATACTACAAGTTTATTTGTCGAAACCGAGTGGATTTGTCACCAGAATACAATATAATGGCATTGATAATCTGCTGGAAGCTGGAAATGAAAAATTCAACAGAGGGTATTGGGACGTTGTTTGGAGTAAAGAAGGAAGTACAGGAACTACCGGGACATTTGAGCGGATTGTAGGAACGAGTTTTAATGTTATAGTGGAAAATGAAGAACAAATTGAAATATCGTTCACAAGAATGTGGGATCCGTCTATGGAAGGAAAGCTTTCCCCTCTCAACATTGACAAAAGGTATGTGATGCTACGTGATTCCTCAGGATTCTATTGCTACGCAATATTTGAACACCAAAAGGAGTGGCCTGCTTTCAACATCCCCCAAATCAGGATCGTTTTCAAGCTTCGAGAAGACAAGTTTCATTATATGGCAGTGGCAGATAATAGACAAAGATTCATGCCTCTTCCAGAGGACCGATCACCCGGAAGGGGAAAAGTACTCGTTCCCCCGGAAGCAGTTTTGCTTGCTGACCCTGTGGAGCCAGAGTTCAAGGGGGAGGTGGATGACAAGTACCAATACTCGTGCCAAAACAAAGATCTAAAGGTTCATGGGTGGATAAGTTCTAAATCGGAAAGTGATACAGGCACAGGATTTTGGGTAATCATACCTAGCAATGAGTTTCGTTCGGGTGGCCTCACGAAACAGAATCTTACCTCCCATGTGGGTCCTATTAGCCTCGCCATGTTTCTTAGCGCTCATTACGCAGGAGAGGATCTGGTCCTGAAACTCAGTCCAAACGAACCTTGGAAGAAAGTTTTTGGCCCCACTTTTATATATCTTAATGCTTTGTTGGATGGTGAAGACCCACTTGAGCTTTGGGAGGATGCCAAAGATCAGATGAATGAGGAAGTTGAAAACTGGCCCTATGATTTTCCAGCTTCAGAGGATTTTCAATTTCTAGCGAAAGGGGCAGTGTAA 1029 0.4344 MSSEEAMQLRIEDNHVVMDNGILQVYLSKPSGFVTRIQYNGIDNLLEAGNEKFNRGYWDVVWSKEGSTGTTGTFERIVGTSFNVIVENEEQIEISFTRMWDPSMEGKLSPLNIDKRYVMLRDSSGFYCYAIFEHQKEWPAFNIPQIRIVFKLREDKFHYMAVADNRQRFMPLPEDRSPGRGKVLVPPEAVLLADPVEPEFKGEVDDKYQYSCQNKDLKVHGWISSKSESDTGTGFWVIIPSNEFRSGGLTKQNLTSHVGPISLAMFLSAHYAGEDLVLKLSPNEPWKKVFGPTFIYLNALLDGEDPLELWEDAKDQMNEEVENWPYDFPASEDFQFLAKGAV* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g1880 342 SUPERFAMILY Galactose mutarotase-like 13 298 IPR011013 GO:0003824|GO:0005975|GO:0030246
Amo07g1880 342 CDD RGL4_N 7 298 - -
Amo07g1880 342 Pfam Rhamnogalacturonate lyase family 8 204 IPR010325 -
Amo07g1880 342 Gene3D - 6 276 IPR014718 GO:0030246
Amo07g1880 342 PANTHER LG27/30-LIKE GENE 6 337 - -
Amo07g1880 342 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 6 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g1880 Amo-Chr7 56169748 56183455 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g1880 7 334 Polysaccharide Lyase AT1G09890 65.350 1.40e-153 443
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g1880 K18195 - gmx:100815677 580.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2999 17 132731426 132752415 Amo07g1880 07 56169748 56183455 hybridization