Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g1844 TTATTGTTTTGCTATAATAAGGGAGAAACCTCTCTTTCCTTTCTTGAGATCCAAAAACAGCATTCCGGAGTGACGAGCAAGCACAAGAGGCTGAAGATGGTGAGGCAAAAGATCAAGATAAAGAAGATAGACAACATAACAGCAAGACAAGTAACGTTTTCAAAGAGGAGAAGAGGGATCTTCAAGAAAGCACAAGAACTTTCTGTGCTTTGTGATGCTGAGGTTGCTCTCATCATTTTCTCTGCCACTGGGAGGCTCTTTGAATATGCTAGCTCCAGTATGAAGGACATAACTGCAAGGTATGCTCAGCATACACATGAGATAAGTAGATCAGAAAGACCTCTTGAACTGCAGCTGGAGAATGTCAATAACGATGAATTACGTAAGGAAGTTGCTGATAAAACTCACCAACTAAGGCAGATGAAAGGTGAAGATTTTCAAGGGATGAACCTACAAGACTTGCTACAACTGGAGAAAGCACTTCAAACAGGATTAAATCGCGTGATTGAGACAAAGGAAAAGCGGATCATGGATGACATCGCAGCACTCCAGAAAAAGGGAGACGAATTAGAACAAGAGAACAAGAAGTTAAAGCAAAAGATGGATATTGGCATGCAAGAAGTGGTGTCATCGGAGTCACTAAATAATGCATGCAGCTGCATCAGTAGTGCCGCTCCTTCTTCTCTTGAAGATCATTCCTCTGACACATCTCTTAAGTTAGGGTTGCCCTTCCCTAATTGA 741 0.417 LLFCYNKGETSLSFLEIQKQHSGVTSKHKRLKMVRQKIKIKKIDNITARQVTFSKRRRGIFKKAQELSVLCDAEVALIIFSATGRLFEYASSSMKDITARYAQHTHEISRSERPLELQLENVNNDELRKEVADKTHQLRQMKGEDFQGMNLQDLLQLEKALQTGLNRVIETKEKRIMDDIAALQKKGDELEQENKKLKQKMDIGMQEVVSSESLNNACSCISSAAPSSLEDHSSDTSLKLGLPFPN* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g1844 246 ProSiteProfiles MADS-box domain profile. 33 93 IPR002100 GO:0003677|GO:0046983
Amo07g1844 246 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 33 240 - -
Amo07g1844 246 ProSitePatterns MADS-box domain signature. 35 89 IPR002100 GO:0003677|GO:0046983
Amo07g1844 246 Pfam K-box region 125 201 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo07g1844 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 33 240 - -
Amo07g1844 246 SUPERFAMILY SRF-like 35 106 IPR036879 GO:0003677|GO:0046983
Amo07g1844 246 Coils Coil 173 207 - -
Amo07g1844 246 MobiDBLite consensus disorder prediction 224 246 - -
Amo07g1844 246 PRINTS MADS domain signature 55 70 IPR002100 GO:0003677|GO:0046983
Amo07g1844 246 PRINTS MADS domain signature 70 91 IPR002100 GO:0003677|GO:0046983
Amo07g1844 246 PRINTS MADS domain signature 35 55 IPR002100 GO:0003677|GO:0046983
Amo07g1844 246 CDD MADS_MEF2_like 44 106 IPR033896 GO:0000977|GO:0045944
Amo07g1844 246 SMART madsneu2 33 92 IPR002100 GO:0003677|GO:0046983
Amo07g1844 246 Coils Coil 124 144 - -
Amo07g1844 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 42 89 IPR002100 GO:0003677|GO:0046983
Amo07g1844 246 ProSiteProfiles K-box domain profile. 117 207 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo07g1844 246 Gene3D - 46 128 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g1844 Amo-Chr7 55237197 55247695 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g1844 33 244 MADS-box Gene Family AT2G22540 52.479 1.09e-75 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Amo07g1844 K-box 1.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g1844 - - vvi:100260900 251.521