Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g1802 ATGAGAAGGTTCACGTGGTTTACGCCGTATCGCCGCCGTTTGCTCTCTTTTGCGTTTTCAGAACCTGTCGTCCATAGAGGACACTGCTTCACCGAATTATTGCCTTTTCGCCAATCGCCGTTTCTCAGTCGAGCTTTGTTCAATCGCAGTAATGTCCCAAAATCGGAGGAGTTTCTGAGTTTGAGTAAACCATTGAGATATCGATATATTCATGCTGCAGCATTTTCGACATCGGTTGAGCAGGATTATTATCAAGTTCTTGGCATTTCTGAGAACGCCACTCAGGATGAGATAAAGAAGGCCTTTCTGTTGCTTGCTAAAAAGTACCATCCAGATGCAAATAAGAATAATCCATCTGCAAAGAGGAAATTTCAAGATATAAGAGAAGCTTATGAGACATTGAGAGATTCTAAAAAGAGGGCCCAATATGACAAGATGAAGATGCAAAGCCGTGGTTCACAGAACATAGAATATGACGACCACAATGATGATTTTGCAGAAAGGTTTCAAAATGCGAAAGAAAGGTTTCAAAATGGTTTTCACCATGAGTTTTCTTCTTCATTTCATACAGTATTCTCTGAGCTATTTGAAGAAGAAATCACTCATTCTTCATCAAGTATAGAGGTGGAGTTGTCCCTTACTTTCTCAGAAGCTGCAAGAGGGTGCACTAAACATGTGTCATTTGATGCATTCGTTCCATGTGATTATTGCGATGGGAGAGGGTATCCACCACGTGCGAAGGCTAAAGTTTGTCCAACATGCCGGGGCTTAGGTCGAGTAACAATACCTCCATTTACATCAACATGCATTACCTGTAAAGGATCAGGTCGCGTCATTAAGGATTTCTGTACGTCTTGTAGAGGATCTGGGGTGGTTGAAGGGATTAAAGAGGTTAAAGTTACAATACCAGCAGGTGTGGATACTGGAGATACAATCCATGTGCCAGAGGCCGGGAATGCCGTTAAAAGTGGAGCTCGACCTGGGAGTTTATACATCAAAATCAAGGTTGCCGAGGATTCAGTCTTTGCCAGGGATGGTGCAGATATCTATGTGGACTCTAATATTAGCTTTACGCAGGCTATTCTTGGTGGCAAAGTTGATGTGCCTACTCTATCTGGGAAGATGCAAGTAAAGATACCCAAGGGTGTTCAACCAGGGCAGCTACTAGTATTACGAGGAAAAGGACTACCAAAGCATGGTTATCTTGTACATCATGGGGATCAGTATGTGCGTTTTCGTATTAACTTCCCCACTAATATTAATGAACGACAACGTGCTATACTTGAAGAACTAGCAGAGGAGGAAATAAAGCAGGAAAACTGCTCAACATTTGAAGGAAACTGGTGGAAGCAAATTATTGAACACTTGAACAGTCCAAATATTATGGTAGAACTATCTGTGCTGATCTTAATCCTCGTCCTCATGCACAAATTGTTGAGCTGA 1443 0.42 MRRFTWFTPYRRRLLSFAFSEPVVHRGHCFTELLPFRQSPFLSRALFNRSNVPKSEEFLSLSKPLRYRYIHAAAFSTSVEQDYYQVLGISENATQDEIKKAFLLLAKKYHPDANKNNPSAKRKFQDIREAYETLRDSKKRAQYDKMKMQSRGSQNIEYDDHNDDFAERFQNAKERFQNGFHHEFSSSFHTVFSELFEEEITHSSSSIEVELSLTFSEAARGCTKHVSFDAFVPCDYCDGRGYPPRAKAKVCPTCRGLGRVTIPPFTSTCITCKGSGRVIKDFCTSCRGSGVVEGIKEVKVTIPAGVDTGDTIHVPEAGNAVKSGARPGSLYIKIKVAEDSVFARDGADIYVDSNISFTQAILGGKVDVPTLSGKMQVKIPKGVQPGQLLVLRGKGLPKHGYLVHHGDQYVRFRINFPTNINERQRAILEELAEEEIKQENCSTFEGNWWKQIIEHLNSPNIMVELSVLILILVLMHKLLS* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g1802 480 CDD DnaJ 82 136 IPR001623 -
Amo07g1802 480 ProSiteProfiles dnaJ domain profile. 82 147 IPR001623 -
Amo07g1802 480 SMART dnaj_3 81 139 IPR001623 -
Amo07g1802 480 ProSitePatterns Nt-dnaJ domain signature. 124 143 IPR018253 -
Amo07g1802 480 Gene3D - 337 447 - -
Amo07g1802 480 Gene3D DnaJ domain 78 205 IPR036869 -
Amo07g1802 480 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 45 457 - -
Amo07g1802 480 CDD DnaJ_zf 234 290 IPR001305 GO:0031072|GO:0051082
Amo07g1802 480 Hamap Chaperone protein DnaJ [dnaJ]. 79 439 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Amo07g1802 480 SUPERFAMILY HSP40/DnaJ peptide-binding domain 207 337 IPR008971 GO:0006457|GO:0051082
Amo07g1802 480 Pfam DnaJ central domain 234 290 IPR001305 GO:0031072|GO:0051082
Amo07g1802 480 ProSiteProfiles Zinc finger CR-type profile. 221 295 IPR001305 GO:0031072|GO:0051082
Amo07g1802 480 SUPERFAMILY Chaperone J-domain 81 167 IPR036869 -
Amo07g1802 480 Pfam DnaJ C terminal domain 207 417 IPR002939 -
Amo07g1802 480 PANTHER CHAPERONE PROTEIN DNAJ 1, MITOCHONDRIAL 45 457 - -
Amo07g1802 480 CDD DnaJ_C 205 420 - -
Amo07g1802 480 Pfam DnaJ domain 82 144 IPR001623 -
Amo07g1802 480 Gene3D - 206 335 - -
Amo07g1802 480 Gene3D - 264 297 - -
Amo07g1802 480 Gene3D - 230 263 - -
Amo07g1802 480 SUPERFAMILY HSP40/DnaJ peptide-binding domain 341 428 IPR008971 GO:0006457|GO:0051082
Amo07g1802 480 PRINTS DnaJ domain signature 84 102 IPR001623 -
Amo07g1802 480 PRINTS DnaJ domain signature 139 158 IPR001623 -
Amo07g1802 480 PRINTS DnaJ domain signature 102 117 IPR001623 -
Amo07g1802 480 PRINTS DnaJ domain signature 119 139 IPR001623 -
Amo07g1802 480 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 221 292 IPR036410 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g1802 Amo-Chr7 53141353 53151425 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g1802 73 149 C2H2 Transcription Factor Family AT1G74250 39.024 1.06e-07 52.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g1311 17 40407896 40422096 Amo07g1802 07 53141353 53151425 hybridization