Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g1780 ATGCTGATCCTTCAAAATATGGATCATGGAGAACTCTCTAACGCTTTCCCTCATCATCAGAATCAGAATCCAACTACTACTCCTCCTCCTTCTTTGAAGAGGAAGAGAAACCTCCCAGGAAACCCAGATCCGGAAGCGGAAGTAATAGCCTTATCCCCAAAGACACTAATGGCTACAAACAGGTTCTTGTGTGAAACCTGTGGGAAGGGTTTCCAAAGGGATCAAAACCTTCAACTCCATAGAAGAGGACACAACCTTCCATGGAAGCTAAAACAAAGAACAAATAAAGAACCAAAGAAGCGTGTATACGTGTGTCCGGAGAAAACATGTGTCCACAACCACCCTTCAAGGGCTTTGGGAGACTTGACCGGAATCAAGAAGCACTTTTGCCGGAAGCACGGCGAGAAGAAGTGGAAGTGCGACAAATGCTCGAAGCGTTACGCGGTTCAGTCCGATTGGAAAGCCCACTCCAAAACCTGTGGTACAAGAGAATACAAGTGTGATTGTGGAACCATCTTTTCACGGAGGGATAGCTTCATAACTCACAGGGCATTTTGTGATGCATTGGCAGAAGAAACAGCTAGGGTAAATGCAGCATCAAGCATAAACAATTCAACATTAGGGGCTAATAATAATAACAATAACATTATTGGTTACAATAACATGATGATAGGAACCTCCATGGCCCCTCATCATAATAATAATAATAACATGGCAACCCAATTTGCTTCAATTTGCAATAAGCCAATTCCATTCCCTGAAGAAGCCAGAAATAACCAAACAACAACAAGAGGATTATCCCTTTGGATGGACCATCATCATCATCATCGTCAAGAAGCAACGATGGCCACTAATAACAATAATTACCATCTGAACTGGGTATTCGGATCGAAAATTTCGACCAATCTAAGCCAAGATCTAAGTAGCAATACTACTATTACTAGTACTACTACTACATCGCTTAGTGTTCCTTCATTGTATAGCTCACAACATCAACCCCATCAAACATGTGCTTCTTCATCGTCGGCGAACATGTCGGCGACGGCATTGTTGCAGAAAGCCGCTCAAGTTGGTGCAACCTCATGTGGTCCATCATCATTCTTGGGGGCATTAGGGTTGAAATGCAGCAATGGTAGTGGTCAAGGGCAAGATGGGAATAACAATAAGTTTTGTGGGGTGTATGGTTCAAGTTTGGTGCTAACAAGTAGTAGTAATAATATTAATACAGAGCCAGAGAACAATGAATTGTCACAAATGCTCCCTTCAAAGAGGAGACATGTAATGCCGAATGAGGAGAGTGGAGGAGGGCAAACTAGGGACTTCCTTGGTGTTGGGGGTGCAAACCACCATTTCCCACCCTTCATCAACCAAAGCCTGGATTTGATTTGA 1389 0.4312 MLILQNMDHGELSNAFPHHQNQNPTTTPPPSLKRKRNLPGNPDPEAEVIALSPKTLMATNRFLCETCGKGFQRDQNLQLHRRGHNLPWKLKQRTNKEPKKRVYVCPEKTCVHNHPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVNAASSINNSTLGANNNNNNIIGYNNMMIGTSMAPHHNNNNNMATQFASICNKPIPFPEEARNNQTTTRGLSLWMDHHHHHRQEATMATNNNNYHLNWVFGSKISTNLSQDLSSNTTITSTTTTSLSVPSLYSSQHQPHQTCASSSSANMSATALLQKAAQVGATSCGPSSFLGALGLKCSNGSGQGQDGNNNKFCGVYGSSLVLTSSSNNINTEPENNELSQMLPSKRRHVMPNEESGGGQTRDFLGVGGANHHFPPFINQSLDLI* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g1780 462 Gene3D Classic Zinc Finger 131 198 - -
Amo07g1780 462 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 32 461 - -
Amo07g1780 462 SUPERFAMILY beta-beta-alpha zinc fingers 61 158 IPR036236 -
Amo07g1780 462 Gene3D Classic Zinc Finger 41 115 - -
Amo07g1780 462 PANTHER F-BOX ASSOCIATED PROTEIN 32 461 - -
Amo07g1780 462 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Amo07g1780 462 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
Amo07g1780 462 MobiDBLite consensus disorder prediction 15 32 - -
Amo07g1780 462 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g1780 Amo-Chr7 52677089 52680223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g1780 29 445 IDZ Gene Family AT1G03840 53.118 8.21e-139 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo07g1780 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g1780 K25870 - ahf:112767274 764.222