Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g1775 ATGGCTTTGGAAGCAGTGGTTTTCCCACAAGATCCACTTTCTTATACTTGTAACAAGGATAACTATTTGTACTCCATAGCTGCAAGTGGTGGACCTTGGAGCAACCATGAAGAACTCTACGGTAATAATGTCACGGATTCCATGGACCAATGGGATTCTTACAACTCGAATTCCTCCCCTGAGCCTTGCATCACCACCATTGATCACGATCAAACATCGGTTCCTGGAGTTAACAATTCCCCCCTTGCCCCGGTAGAAGCCACCACGAGTAGCAACACAATTGCTGCTGGGACGGCTTCCACGGGGCGACGCAAGAGGAGACGTACGAAAAGCGTGAAGAACAAGGAGGAGATTGAGAACCAAAGGATGACCCACATTGCAGTTGAGAGAAACCGAAGGAAACAGATGAATGAGTACCTGGCTGTACTTAGATCCTTGATGCCTCCCTCTTATGTACAAAGGGGTGATCAAGCGTCTATTATTGGTGGCGCAATTAACTTTGTGAAGGAGCTAGAACAGCTTGTACAGTGCATGAACGGCCAAAAGAAAACAAAACAAGAACACCACAACAACACTGTACCCTTTGCCGAGTTCTTCATGTTCCCTCAGTACTCAACACACGCCACTCGTTATTGCAACAACGACAACACGGTGTACCCGCCGTGCYTCGAGGCGGCCACGAAGAAGCCATCGTGGTCGTCSACGGCCGCYGTCGACATAGAAGTGTCGTTGGTAGATAGCCATGCTAACATGAAGATATTGTCAAAGAAGCAACATGGTTTGCTTGTGAAGATGGTTATTGGACTACAAAATCTGGGTTTCACCATTCTCCACCTTAATGTTACAACCGCTAATGATATGGTCCTTACCTCAGTTAGTGTCAAGGTGGAGGAAGGGAGTCAGTTGAATACAGTGGATGAAATCGCAGCTTCTGTGAATGAACTTTTACGCACAATCCATGAAGAAGTTCCTCCCTACGCTGATCATCATCAATTATAA 999 0.4645 MALEAVVFPQDPLSYTCNKDNYLYSIAASGGPWSNHEELYGNNVTDSMDQWDSYNSNSSPEPCITTIDHDQTSVPGVNNSPLAPVEATTSSNTIAAGTASTGRRKRRRTKSVKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPPSYVQRGDQASIIGGAINFVKELEQLVQCMNGQKKTKQEHHNNTVPFAEFFMFPQYSTHATRYCNNDNTVYPPCXEAATKKPSWSSTAAVDIEVSLVDSHANMKILSKKQHGLLVKMVIGLQNLGFTILHLNVTTANDMVLTSVSVKVEEGSQLNTVDEIAASVNELLRTIHEEVPPYADHHQL* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g1775 332 PANTHER MAX DIMERIZATION, MAD 1 323 - -
Amo07g1775 332 CDD bHLH_AtFAMA_like 123 187 - -
Amo07g1775 332 MobiDBLite consensus disorder prediction 51 99 - -
Amo07g1775 332 Pfam Helix-loop-helix DNA-binding domain 121 172 IPR011598 GO:0046983
Amo07g1775 332 Gene3D - 110 194 IPR036638 GO:0046983
Amo07g1775 332 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 323 - -
Amo07g1775 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 120 189 IPR036638 GO:0046983
Amo07g1775 332 MobiDBLite consensus disorder prediction 51 116 - -
Amo07g1775 332 SMART finulus 126 177 IPR011598 GO:0046983
Amo07g1775 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 120 171 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g1775 Amo-Chr7 52455648 52458591 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g1775 1 296 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 45.016 1.85e-67 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo07g1775 HLH 7.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g1775 - - gmx:100797856 367.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g3098 17 134983370 134985755 Amo07g1775 07 52455648 52458591 hybridization
Amo07g1775 07 52455648 52458591 Amo17g3098 17 134983370 134985755 PCT
Amo17g3098 17 134983370 134985755 Amo07g1775 07 52455648 52458591 PCT