Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g1771 ATGGCATGGAAACACAGAAAGCTCTTCCCAGCACAAACAAACCAAACCCAAGATTGTTCTGGGTTATGTGACCCTGCATGTCCGTACAACTGTTACACCAATTACCCTGACTACTATTTTTCACCACCACCACCACCTTCTTCCACCATTTCTGACCACTCCGGCAACCACATCTCCTCCTACTTAATCATCCTCATATCGTTATTCTCTGTCATTTTCCTTCTCATCTGTCTATACGTCGTGAAACTTAAGTGCTACGCCGCCTGGTGCAGGCGGAGGCTCGACAACGGCTCCGTCCGCACGCAGTCGGACGACGAGTTTGTCAATGAAAACCAAATTGATCATCCGGTGTGGCTAATAGCCACGGTTGGTTTGCAACAATCCGTTATAAATTCTATAACCGCTTGCCGGTACAGAAAGGACGACGGTTTGATTGAAGGAATAGAGTGCTCTGTTTGCTTGAACGAGTTTCAAGAAGGGGAAACATTGAGGCTCTTGCCCAAGTGTAGTCACGCTTTTCACATTCCGTGTATTGACACGTGGCTACGCTCTCATACAAATTGTCCTCTTTGCCGAGCTCGTATTGTTTCTAACAACAATGCAAATTCTGAAACGGGAATTTCAAATTCGATCTCAGTGGGTCAAGAAAACGGTGGTAGTGGTAACGGTTTTAGAAGGAATCCGAATCAAGAGGAATCGAGAATCGAGGGTGGATTAAGCAGCGATAATATGTTTACTAATTTCGACATGGAAAACAGTCCTGGAGCAGGAGAGGTCAGCGAGTTAGTTGAAATTGAAGGAAGATTCAGTGAGGAATCGAATTCGAAGGAGCGAGTGGATTTCGATACATGTCATAGTGTTCGTGGGATTCCGACTGATGAGATACAAACGGAGATTGTAGCGAATTCAGAACCTGAAATTCACACGGCAGATCATATAGAAGATGGTGACAGACGTGGTTCTTCAATTGAAGAATGTTTGTACATAGGTCCGGCTTCTATGCAAAGGTCATCCTCATGCAATGGAAGGATTCTATAG 1038 0.4489 MAWKHRKLFPAQTNQTQDCSGLCDPACPYNCYTNYPDYYFSPPPPPSSTISDHSGNHISSYLIILISLFSVIFLLICLYVVKLKCYAAWCRRRLDNGSVRTQSDDEFVNENQIDHPVWLIATVGLQQSVINSITACRYRKDDGLIEGIECSVCLNEFQEGETLRLLPKCSHAFHIPCIDTWLRSHTNCPLCRARIVSNNNANSETGISNSISVGQENGGSGNGFRRNPNQEESRIEGGLSSDNMFTNFDMENSPGAGEVSELVEIEGRFSEESNSKERVDFDTCHSVRGIPTDEIQTEIVANSEPEIHTADHIEDGDRRGSSIEECLYIGPASMQRSSSCNGRIL* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g1771 345 SMART ring_2 150 191 IPR001841 -
Amo07g1771 345 SUPERFAMILY RING/U-box 141 198 - -
Amo07g1771 345 Pfam Ring finger domain 149 192 IPR001841 -
Amo07g1771 345 MobiDBLite consensus disorder prediction 207 240 - -
Amo07g1771 345 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 6 324 IPR044675 -
Amo07g1771 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 202 IPR013083 -
Amo07g1771 345 ProSiteProfiles Zinc finger RING-type profile. 150 192 IPR001841 -
Amo07g1771 345 CDD RING-H2_PA-TM-RING 149 192 - -
Amo07g1771 345 SMART FANCL_C_2 146 199 - -
Amo07g1771 345 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g1771 Amo-Chr7 52102989 52104105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g1771 4 196 C3H Transcription Factor Family AT1G72220 47.297 2.81e-59 194
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g1342 17 42028622 42029812 Amo07g1771 07 52102989 52104105 hybridization