Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g1753 AAAGCCAAGTACCCAGAGCTGGGAACCGTTCTCTTAAGGTCATCGATTTTGTTTACTGGATTCTGTGGCTATGGTTCTCGCTGCCGTTTCAATCATCCGCATGACCGTGCGGCGGAAACTTGGAGTATTGAGGCTAAGATCTTGACCATTTGGGAAGATGCTAGCATTGTTAATGAAAATATGCAGAAACTCTTACATGTGGTGTTGATGGATAAGCAGCACGACAAGGTCCAAGCAACTGTTGACGATGATTTGATCACAACTTTTATTCATCAGTTAAAAGAAGGACATGTATTCATTATTTCCGACTTCAAAGTGATACCTAATGGTGGATTGGTTAGGGTTACAAGACATCGATTCCGCATCCTTTTCAAGTGTAGTACCTCTGTTGTTGCAGCTGCAAATAGAGACATACCTAATCCTGGTTTAAGTTTAACCTCTATGGACGAGATTCTTCAAAAGCGCACTGATTATGAGTACTTAATAGGTAATTTGAAAAGGTATCAGAGACCACCAGTTCTTATTTTGCAATCTTTCAAGATCAAAGTCAATGGAGATAAAGTTAGTCTCCAAAATGTGATCAATGTTTCTCGGGTTTCAATCAACCCTGATATGTAG 618 0.3997 KAKYPELGTVLLRSSILFTGFCGYGSRCRFNHPHDRAAETWSIEAKILTIWEDASIVNENMQKLLHVVLMDKQHDKVQATVDDDLITTFIHQLKEGHVFIISDFKVIPNGGLVRVTRHRFRILFKCSTSVVAAANRDIPNPGLSLTSMDEILQKRTDYEYLIGNLKRYQRPPVLILQSFKIKVNGDKVSLQNVINVSRVSINPDM* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g1753 205 Gene3D - 35 135 IPR012340 -
Amo07g1753 205 CDD RPA1_DBD_A_like 42 130 - -
Amo07g1753 205 Pfam Domain of unknown function DUF223 67 161 IPR003871 -
Amo07g1753 205 ProSiteProfiles Zinc finger C3H1-type profile. 6 35 IPR000571 GO:0046872
Amo07g1753 205 SUPERFAMILY Nucleic acid-binding proteins 40 134 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g1753 Amo-Chr7 51098890 51101856 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g1753 17 37 C2H2 Transcription Factor Family AT5G18550 80.952 8.44e-06 43.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo07g1753 DUF223 8.7e-14 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g1753 - - ahf:112717929 284.263