Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g1685 ATGGCAGGGAAGAACAGGCAAAACAAGAAGATGGGAATGGGAAATGAATTTGGTTGTGGATTCATGGGTGGAATTATCCATCTTAAAAGCTATTGGTTGAAAAATTCTTCTGTTCATTCACTTCCCATGAAAGCTAGCAACATATATAATGCATCAAAGAAGTCTCAGAACAAAGAAGAACCAAAGGTTAGAACAAGGAGAAACTCCACTGACACCGTAATCACACAAAAGCTGAGTATCTCAGACCAAAAACCTTGCGCAAAAGGTACCCTTGTACTTCAAAGTAGAAGACTATCAGATGCTGCAAGAATCTCAACATCCACATCGGCATCAACGTCGACATTATCGAATGACGACAGCAAACTGCAGCTGGCAAAGATAAATGAGAGAAACAACAAGTCTCCGGCCACGGCGCAACTAGCCGGAAACTTGCTTGTAAATAATAACACTCCAAGAGCAAAGAGCCTCCGGGAGTGTGGGCCTAAGAGCAAAACAGAGTGGAACTCCTCGTCCGGAAAAGCTTCGATGGGTAACATAATGAGGAAGAACAGCTGCGGCGGCGATGAGTTTGCGAGAAACAAGAAGGTGGTGGACCCGGAGGTGTTGAAGAACATGGGAAACAATGCGTATAAGGGAGGAAGGTTTGAAGAGGCTGTGGCTTTGTATGACAGAGCAATTGCTTTGGATTCAAGTAAGGCAACTTATCATTGCAACAAGAGTGCTGCTTTGATTGGCTTAAGAAGATTTCAAGAAGCAGTTGCTGAGTGTGAGGAATCTGTTAGGTTGGAGCCTTCGTATACCAGAGCTCATAACCGTTTGGCAACAATATATTTCAGATTGGGAGAAGCAGAGAAAGCCCTCGATTGCAATCAGTTAACCCCAGATACTGATTCTGCACTGGCTTTCCAAACTCAGACTCTTCAGAACCACCTTAACAAATGCAATGAAGCTCGGAAATTTAATGAATGGGGTGTTGTACTAAAGGAAACACAGTCAGCAATCTCCTTAGGGGTTGATTCATCTCCACAGGTCTATGCTTTGCAAACTGAAGCCTTGTTGAAGCTCCTAAGATATCAAGAGGCACAAGTCACCTATGAGAAAATGCCAAAATTCTCACCTGATTGGTGCAACAAGATATTTGGCTTTGCTCGCAGTTCCTACCAGTTCATGATCGCCGCACAGGTTTACTTGGCAGCTGGCAGGTTTGAGGATGCCGTTGCGGCAGCTCAGAAAGCAGCTAACGTGGATCCAAGCAACAGAGAGGCGAATGCAATGTTAAGGAAGGCCAGAGCAGTAACATCAGCAAGAATGAGTGGAAACTTACTCTTCAAGGCATCGAAGTTTGTGGAAGCAAGCGCAGTGTACAACGAAGGACTAGATCATAATCCGCACAACTCAGTCCTGCTATGCAACAGAGCGGCGTGTCGTTCCAAGCTCGGCCAATTCGAGAAAGCTATTGAAGATTGCAATGCCGCACTCATAGTCCAGCCTTCCTACAGCAAAGCAAGGTTAAGGAGGGCAAATTGCAATGCCAAGTTGCAAAGATGGGAAGTTGCCATTCAAGACTATGAAATGCTATTAAGGGAGAAGCCAGGGGATGAGGAAGTAGCCAGGGAATTGTTTGAGGCTCAGCTACAACTTAAGATGCTCCGCGGCGAATTTATTGTAAACTTGAAATTTGGCGCGAATTTGGTGTTCATTTCAAACAATGATCAATTTAGACAATATGTAACTTCTCCTGGAATGGCTGTGGTACTATTTACCAACAGGGCAGCAAACAAACAAGTACTTCTAGTGTTGGAGCAAATTAGCAAGAGATTCCCATCAGTGAATTTCCTCAAGGTGGAGATTGAGGACCATCCCTACTTGGCAAAATCAGAAGCTGTGAACTCTATTCCAGCTTTCAAAATATACAAGAATGGATCAAGGGTAAAAGAAATTTCTGGAAAAAACCATGATTTATTAGAAAAATCAGTTCAATTGTATAGCGGCTGA 1995 0.4376 MAGKNRQNKKMGMGNEFGCGFMGGIIHLKSYWLKNSSVHSLPMKASNIYNASKKSQNKEEPKVRTRRNSTDTVITQKLSISDQKPCAKGTLVLQSRRLSDAARISTSTSASTSTLSNDDSKLQLAKINERNNKSPATAQLAGNLLVNNNTPRAKSLRECGPKSKTEWNSSSGKASMGNIMRKNSCGGDEFARNKKVVDPEVLKNMGNNAYKGGRFEEAVALYDRAIALDSSKATYHCNKSAALIGLRRFQEAVAECEESVRLEPSYTRAHNRLATIYFRLGEAEKALDCNQLTPDTDSALAFQTQTLQNHLNKCNEARKFNEWGVVLKETQSAISLGVDSSPQVYALQTEALLKLLRYQEAQVTYEKMPKFSPDWCNKIFGFARSSYQFMIAAQVYLAAGRFEDAVAAAQKAANVDPSNREANAMLRKARAVTSARMSGNLLFKASKFVEASAVYNEGLDHNPHNSVLLCNRAACRSKLGQFEKAIEDCNAALIVQPSYSKARLRRANCNAKLQRWEVAIQDYEMLLREKPGDEEVARELFEAQLQLKMLRGEFIVNLKFGANLVFISNNDQFRQYVTSPGMAVVLFTNRAANKQVLLVLEQISKRFPSVNFLKVEIEDHPYLAKSEAVNSIPAFKIYKNGSRVKEISGKNHDLLEKSVQLYSG* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g1685 664 SUPERFAMILY Thioredoxin-like 532 658 IPR036249 -
Amo07g1685 664 MobiDBLite consensus disorder prediction 152 178 - -
Amo07g1685 664 Pfam Thioredoxin 569 657 IPR013766 -
Amo07g1685 664 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 1 661 IPR044534 -
Amo07g1685 664 SMART tpr_5 267 300 IPR019734 GO:0005515
Amo07g1685 664 SMART tpr_5 432 465 IPR019734 GO:0005515
Amo07g1685 664 SMART tpr_5 199 232 IPR019734 GO:0005515
Amo07g1685 664 SMART tpr_5 386 419 IPR019734 GO:0005515
Amo07g1685 664 SMART tpr_5 466 499 IPR019734 GO:0005515
Amo07g1685 664 SMART tpr_5 500 533 IPR019734 GO:0005515
Amo07g1685 664 SMART tpr_5 233 266 IPR019734 GO:0005515
Amo07g1685 664 Pfam Tetratricopeptide repeat 242 287 - -
Amo07g1685 664 Pfam Tetratricopeptide repeat 392 465 - -
Amo07g1685 664 Gene3D Glutaredoxin 559 663 - -
Amo07g1685 664 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 1 661 - -
Amo07g1685 664 Pfam TPR repeat 206 238 - -
Amo07g1685 664 MobiDBLite consensus disorder prediction 49 71 - -
Amo07g1685 664 CDD TRX_family 571 649 - -
Amo07g1685 664 Pfam Tetratricopeptide repeat 468 499 IPR001440 GO:0005515
Amo07g1685 664 MobiDBLite consensus disorder prediction 162 178 - -
Amo07g1685 664 SUPERFAMILY TPR-like 199 422 IPR011990 GO:0005515
Amo07g1685 664 ProSiteProfiles TPR repeat profile. 199 232 IPR019734 GO:0005515
Amo07g1685 664 SUPERFAMILY TPR-like 437 548 IPR011990 GO:0005515
Amo07g1685 664 ProSiteProfiles TPR repeat profile. 386 419 IPR019734 GO:0005515
Amo07g1685 664 Gene3D Tetratricopeptide repeat domain 197 551 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g1685 Amo-Chr7 47827849 47832761 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g1685 200 431 U-box Gene Family AT3G07370 23.881 1.62e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g1685 K09527 - gmx:100782846 828.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g3158 17 136027032 136028386 Amo07g1685 07 47827849 47832761 hybridization
Amo07g1685 07 47827849 47832761 Amo08g1025 08 17541908 17545421 PCT
Amo07g1685 07 47827849 47832761 Amo17g1476 17 51552493 51557615 PCT
Amo08g1025 08 17541908 17545421 Amo07g1685 07 47827849 47832761 PCT
Amo17g1476 17 51552493 51557615 Amo07g1685 07 47827849 47832761 PCT