Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g1680 ATGGCCTTGTTTGGTGGGTTATTGGGTCAATACCAGAAGAGAAGGCTTCTCTTCACTGTAGAAGAAAGCAATAATAATAAAGGAGGCAATAACAAAGTTAACCCCTGGCTTGAATCAATGAGAGCTTCTTCTCCTACACGAATCACACCCAACAACAATAACAACCAAGACGATAGCAACAACAACCCCTCTTGGATCGTTGGTCATCCATCTGCGCTGAAGATGTTTGATGAGATAATATGGAACTCGAAAGGGAAGCAAGTTGTTGTGTTTCTTGATTACGATGGAACTCTTTCTCCAATTGTTGCAGATCCAGAGAAAGCATTCATGACTAAAAAGATGAGAGCAATACTAAAGGACATAGCAAGACTATTTCCCACTGCCATAGTAACCGGAAGATGTATTGACAAGGTATACGATTTTGTAAGATTGGGAGAAGTGTACTATGCTGGAAGTCACGGTATGGACATCAAAGGACCAACAAAAAGCCGCAATCATCAGAAAGGTAATAATAATGAAGCATTAGTGCTCTTCCAACCTGCGAGTCAATTCTTGCCCATGATCAACGAGGTGTACAAGATCTTGGTAGAAAAAATGAAAGCTATTCCAGGGGCTAAAGTAGAAAACAACAAGTTTTGTCTGTCCGTGCACTTTCGATGTGTTGAAGAAAAGTGCTGGTCAGCCTTGGCGGAACAAGTTAATTCAGTGCTCAAGGAGTACCCAAAACTTAAGTTAACACACGGGAGAAAAGTGATTGAGATTCGTCCAACTATAAAATGGGACAAAGGCAAGGCTATTGAATTCTTGTTAGAGTCACTAGGCTATGCAAATTCTACCAGCGTATTTCCCATCTATATTGGTGATGATAGAACTGATGAGGATGCTTTTAAGGTTCTACGTAGTAAGGGCCAAGGAATTGGGATTCTTGTTTCTCAAATTCAAAAAGAAACTAAGGCTATCTACACTTTGCATGATCCTTTAGAGGTTGGACAATTTTTAAGGCGTTTGGCAGATTGGAAAAAAAAACAAGTTCTAGCCATACACCCACCACAAATTGTAGATTTGTAG 1068 0.4007 MALFGGLLGQYQKRRLLFTVEESNNNKGGNNKVNPWLESMRASSPTRITPNNNNNQDDSNNNPSWIVGHPSALKMFDEIIWNSKGKQVVVFLDYDGTLSPIVADPEKAFMTKKMRAILKDIARLFPTAIVTGRCIDKVYDFVRLGEVYYAGSHGMDIKGPTKSRNHQKGNNNEALVLFQPASQFLPMINEVYKILVEKMKAIPGAKVENNKFCLSVHFRCVEEKCWSALAEQVNSVLKEYPKLKLTHGRKVIEIRPTIKWDKGKAIEFLLESLGYANSTSVFPIYIGDDRTDEDAFKVLRSKGQGIGILVSQIQKETKAIYTLHDPLEVGQFLRRLADWKKKQVLAIHPPQIVDL* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g1680 355 Gene3D - 90 323 IPR023214 -
Amo07g1680 355 CDD HAD_TPP 89 330 - -
Amo07g1680 355 Pfam Trehalose-phosphatase 91 325 IPR003337 GO:0003824|GO:0005992
Amo07g1680 355 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 90 300 IPR006379 -
Amo07g1680 355 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 342 IPR044651 GO:0004805|GO:0005992
Amo07g1680 355 MobiDBLite consensus disorder prediction 43 64 - -
Amo07g1680 355 Gene3D - 170 257 - -
Amo07g1680 355 TIGRFAM T6PP: trehalose-phosphatase 85 337 IPR003337 GO:0003824|GO:0005992
Amo07g1680 355 SUPERFAMILY HAD-like 89 340 IPR036412 -
Amo07g1680 355 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g1680 Amo-Chr7 47133965 47137886 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g1680 84 338 Trehalose Biosynthesis Gene Families AT1G70290 26.568 8.07e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g1680 K01087 - gmx:100785139 496.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo07g1680 07 47133965 47137886 Amo08g1023 08 17489291 17491683 PCT
Amo07g1680 07 47133965 47137886 Amo20g1167 20 22881308 22886192 PCT
Amo08g1023 08 17489291 17491683 Amo07g1680 07 47133965 47137886 PCT
Amo20g1167 20 22881308 22886192 Amo07g1680 07 47133965 47137886 PCT