Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g1615 ATGTGCGGCGACGCAACCAACTGGGACGAAAATGCGTACAGGGAGCGCCTCCTCAAGGGGAGGGAGATCCAGACCCAAACCGTTTTCCGTACGGCTTGGGCTCCTAGTCCCCGAAACCCTAATCCTCACTCTCTCGTCGTTGCTTCCAGCGACGGTTCTATCGCCTCCTACTCCATCCCTTCCTGCATCTCCAACCTCAAAAATAATACCGATGCCAATGCGGCTAGATTATTGGCTGAACCAGATTGCTTCTTTCAAGGGCATGATGGACCTACATATGATGTCAAATTCTATGGTGATGGTGAAGATGCACTGTTGTTAAGTTGTGGAGATGATGGGTGGATTCGAGGATGGAGGTGGAAGGAACTTGCAAACTCAAATAGTGCTGTTTCTTCTCAAGGAAACAATATCAAACCCATACTTGACCTGGCAAATCCTCAACACAAAGGTCCTTGGGGTGCACTTTCACCTATCCCTGAGAATAATGCTATTGCTGTTGATTCTCAGGGGGGATCTGTTTTCTCTGCTTCTGGTGATTCTTGTGCATATTGTTGGGATGTGGAAACTGGTAAAGTGAAAATGGTATTTAAGGGGCACTTGGACTACTTGCACTGCATAGTTGCTCGCAACTCATCCAATCAGATTATAACTGGTTCAGAGGACAGGACTGCACGAATTTGGGATTGCAAAAGTGGAAAGTGTATCAAAGTGATTGATCCAGTAGAAGATTTGAACTCAAAAGGATCTGTTTCATGGGTTGGCTGTGTTGCATTAGATGCAAGTGAGAGCTGGTTGGCTTGCAGTAGTGGACGGAATATATCCCTTTGGAACCTTCCTGCTTCAGAGTGCTTATCAAGGATTTCAACTCGTGCTTCTGTACAGGACATGCTATTTGACAGCAACCAAATTTTGGCAGTTGGTGCAGATCCTCTACTGAATCGCTTTGACATGAATGGTGCAATCCTTTCGCAAATACAGTGTGCTCCTGCATCAGCTTTCTCTGTCTCCTTACATCCTGCAGGGGTTGTGGCAGTTGGAGGTTATGGATGTCTTGTAGATGTTATCTCACAATTTGGTAGCCATATGTGCACATTCCATTGCAAGTGCATTTAA 1113 0.4582 MCGDATNWDENAYRERLLKGREIQTQTVFRTAWAPSPRNPNPHSLVVASSDGSIASYSIPSCISNLKNNTDANAARLLAEPDCFFQGHDGPTYDVKFYGDGEDALLLSCGDDGWIRGWRWKELANSNSAVSSQGNNIKPILDLANPQHKGPWGALSPIPENNAIAVDSQGGSVFSASGDSCAYCWDVETGKVKMVFKGHLDYLHCIVARNSSNQIITGSEDRTARIWDCKSGKCIKVIDPVEDLNSKGSVSWVGCVALDASESWLACSSGRNISLWNLPASECLSRISTRASVQDMLFDSNQILAVGADPLLNRFDMNGAILSQIQCAPASAFSVSLHPAGVVAVGGYGCLVDVISQFGSHMCTFHCKCI* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g1615 370 Pfam WD domain, G-beta repeat 192 228 IPR001680 GO:0005515
Amo07g1615 370 Pfam WD domain, G-beta repeat 247 277 IPR001680 GO:0005515
Amo07g1615 370 Gene3D - 7 242 IPR015943 GO:0005515
Amo07g1615 370 Gene3D - 243 367 IPR015943 GO:0005515
Amo07g1615 370 SUPERFAMILY WD40 repeat-like 39 357 IPR036322 GO:0005515
Amo07g1615 370 PANTHER THO COMPLEX SUBUNIT 6 HOMOLOG 9 367 IPR042626 -
Amo07g1615 370 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 196 228 - -
Amo07g1615 370 ProSiteProfiles Trp-Asp (WD) repeats profile. 196 237 IPR001680 GO:0005515
Amo07g1615 370 SMART WD40_4 136 186 IPR001680 GO:0005515
Amo07g1615 370 SMART WD40_4 231 277 IPR001680 GO:0005515
Amo07g1615 370 SMART WD40_4 78 119 IPR001680 GO:0005515
Amo07g1615 370 SMART WD40_4 189 228 IPR001680 GO:0005515
Amo07g1615 370 SMART WD40_4 318 356 IPR001680 GO:0005515
Amo07g1615 370 SMART WD40_4 280 316 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g1615 Amo-Chr7 44377168 44381975 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g1615 164 233 Eukaryotic Initiation Factors Gene Family AT2G46280 32.857 1.04e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g1615 K13175 K03257 gmx:100806423 628.246