Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g1582 ATGGACCCTAATGCCAAGTCGCCCATAATTGTTTTGTCGCCATTCCCCTTTCCCTTTATTAGCTCCAATACCAATCTCAATTGTACAAACAGACAAGCAACAGCGTTAGATAGAGAGATAAAGATCCAATGTGATGCGTGTGACAAAGACGAGGCATCTCTATTCTGTCCTGCAGATGAAGCCGCTCTCTGCCATGCCTGTGACCTTACAATCCACCATGCTAACAAGCTCGCAATCAAGCACACGCGCTTCACTCTCCACCAGCCTTCCTCCAAAGACATCCCTCGCTGCGATATCTGCCAAGAAAGGCGTGCATATCTGTTTTGCAAAGAAGACAGAGCAATACTTTGCAGAGAATGCGATGTTCCTATCCACAAAGCCAACGAACACACGCAGAACCATAGCAGGTTCCTTCTCACTGGTGTGAAGCTCTCTGGTTCCTCTCTCGACACGGCTTCATCATCATCAGTCACCAGCTCAACTGAGGCAAGAAGCTCCCGTTCAAGAATGAAGAGACCCACTGCTTTCAATAATGAGCACAATATGTCTGCGGCTACTACTAGTAATAGTGACACCGGTTCGGCTTCCTCAAGCAGCATATCCAAATTCTTGATTGAAACCATTCCCGGTTACTGCTTCGAAGACCTTCTCGATGCTTCCTTTCCACATAATAATGGTTTCTGTAAGGTTTGCTGA 696 0.467 MDPNAKSPIIVLSPFPFPFISSNTNLNCTNRQATALDREIKIQCDACDKDEASLFCPADEAALCHACDLTIHHANKLAIKHTRFTLHQPSSKDIPRCDICQERRAYLFCKEDRAILCRECDVPIHKANEHTQNHSRFLLTGVKLSGSSLDTASSSSVTSSTEARSSRSRMKRPTAFNNEHNMSAATTSNSDTGSASSSSISKFLIETIPGYCFEDLLDASFPHNNGFCKVC* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g1582 231 ProSiteProfiles Zinc finger B-box type profile. 92 139 IPR000315 GO:0008270
Amo07g1582 231 SMART bboxneu5 39 86 IPR000315 GO:0008270
Amo07g1582 231 SMART bboxneu5 92 139 IPR000315 GO:0008270
Amo07g1582 231 ProSiteProfiles Zinc finger B-box type profile. 39 86 IPR000315 GO:0008270
Amo07g1582 231 PANTHER B-BOX ZINC FINGER PROTEIN 20 40 229 - -
Amo07g1582 231 CDD Bbox1_BBX-like 97 139 - -
Amo07g1582 231 PANTHER B-BOX ZINC FINGER PROTEIN 22 40 229 - -
Amo07g1582 231 CDD Bbox1_BBX-like 44 86 - -
Amo07g1582 231 Gene3D Classic Zinc Finger 40 136 - -
Amo07g1582 231 MobiDBLite consensus disorder prediction 147 195 - -
Amo07g1582 231 Pfam B-box zinc finger 42 83 IPR000315 GO:0008270
Amo07g1582 231 Pfam B-box zinc finger 95 131 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g1582 Amo-Chr7 43402357 43403929 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g1582 40 229 C2C2-CO-like Transcription Factor Family AT1G75540 45.933 7.28e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Amo07g1582 zf-B_box 7.2e-08 No_clan