Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g1571 TTCCTTCATCGGTGTCGTTCTCTCTCATTCTCTCTCTCTCTCTCTCTCTATCCATTACGAATCACCAATCAATCATCACGTAATCTTCATCTTCTTCTTCTTCTTTTTTTCATTTTCTTTTTTTTTCTCTTCCGTGTGATTAGTCCTTCCACCGAGTCAATCGGCATGACTCGGCGGTGCTCACACTGTAGCAACAACGGCCACAATTCCAGGACATGCCCCAACCGCGGCGGCGGCGGCGGAGGCGGCGGAGGAGTGAAGCTGTTCGGTGTGAGGCTGACGGATGGATCAATCATAAAGAAGAGTGCGAGTATGGGGAATCTCATGACGCTTCACCACCATTGTTCGTCTCCTTCTTCCTCCTTTGTGGCCGCCGCCGGCGATAACCCAGGCTCGCCTGACCCTGTCGGTTACTTGTCCGACGACCCTGCCCACGCCTCGTCCTTCGCCAACCGCCGTGGCGAAAGAAAGAAAGGTGTTCCATGGACCGAAGAAGAACATCGGATGTTCTTAGTTGGTCTGCAAAAGCTGGGGAAAGGAGATTGGCGTGGAATATCACGTAATTTTGTTGTATCAAGGACCCCTACTCAAGTAGCAAGTCATGCCCAGAAGTATTTTATCCGACAGAGTAATGCTACCCGGAGAAAGAGGCGTTCCAGCCTCTTTGACATGGCTCCGGATATGCCTACGGATCCGCCTTCGGTGCTGGAAAAACAAGTACTGCTTCTGACCTCTGAGAACTCACAATCTCCCAATGTAAAATCACAACCTTCATTAAATCTATCTCTCAAATCTGAAGTTGACCCCATGGAAATTGCTTCTGAAGAAAATGTGAAAGAGAACAATGTAGCTAATGGGTTGAAACCAAAGGCTGCTGAATACTTCCCAACTTATGTACCTGTCCGATTTTCCATATGGCCATCACTGGAAGCTTCCTTTCAAGAAAGTAATGGAGTAGAGACATCTCATCATGAGGTTGTAAAGCCAATTCCAGTCGTTCCCAAGAATCCGGTCAATGTTGATGCACTTGTGGGAATGTCTAATCTGAGCATTGGAAACACACAGATGATTCTTGAAAGGGAGCCTTCCCCACTTTCCCTGAAATTGTTAGGAGAGCCATCGAGGCAGTCGGCATTCCATGCGAATACTCATGCGCCTGTTGGCCGGACGGACCTAAGCAGTGGCAAGAACAATCCAATCCAAGCTGTTTGA 1212 0.4835 FLHRCRSLSFSLSLSLYPLRITNQSSRNLHLLLLLFFIFFFFLFRVISPSTESIGMTRRCSHCSNNGHNSRTCPNRGGGGGGGGGVKLFGVRLTDGSIIKKSASMGNLMTLHHHCSSPSSSFVAAAGDNPGSPDPVGYLSDDPAHASSFANRRGERKKGVPWTEEEHRMFLVGLQKLGKGDWRGISRNFVVSRTPTQVASHAQKYFIRQSNATRRKRRSSLFDMAPDMPTDPPSVLEKQVLLLTSENSQSPNVKSQPSLNLSLKSEVDPMEIASEENVKENNVANGLKPKAAEYFPTYVPVRFSIWPSLEASFQESNGVETSHHEVVKPIPVVPKNPVNVDALVGMSNLSIGNTQMILEREPSPLSLKLLGEPSRQSAFHANTHAPVGRTDLSSGKNNPIQAV* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g1571 403 ProSiteProfiles Myb-like domain profile. 154 206 IPR001005 -
Amo07g1571 403 SMART sant 158 208 IPR001005 -
Amo07g1571 403 PANTHER OS01G0187900 PROTEIN 56 397 - -
Amo07g1571 403 ProSiteProfiles Zinc finger CCHC-type profile. 58 75 IPR001878 GO:0003676|GO:0008270
Amo07g1571 403 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 157 209 IPR006447 GO:0003677
Amo07g1571 403 CDD SANT 161 206 IPR001005 -
Amo07g1571 403 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 154 210 IPR017930 -
Amo07g1571 403 PANTHER TRANSCRIPTION FACTOR KUA1 56 397 - -
Amo07g1571 403 MobiDBLite consensus disorder prediction 384 403 - -
Amo07g1571 403 Pfam Myb-like DNA-binding domain 161 206 IPR001005 -
Amo07g1571 403 Gene3D - 162 211 - -
Amo07g1571 403 SUPERFAMILY Homeodomain-like 156 211 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g1571 Amo-Chr7 43047746 43050594 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo07g1571 Myb_DNA-binding 1.5e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g1571 - - gmx:778036 460.299