Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g1566 ATGGAATTGCCGGAATACTTCATTGCGGGATATTTTGCCGCCACTCCGGACCAACTCTCGCCGGAGAAGCGTCACGCTGACCAGAAGCCCGGCGAGGTTTTCACCATTGACGACCTTCTCGACTTCTCCAACGCCAACACGGACGCTATCACATCTGACGGATTTTTCAACAATACCGCCGGAAACTCCACCGACGTCTCTGTCGTCACCGCCGTCGACAGCTGTAACTCCTCCATTTCCGGCAGCAGCTTCCGCTGCTTCGCCGGAGTGGATCCTCAATTCTCCGAAGAGTTCTGCGTTCCGTATGATGACGTGGCGGAACTGGAATGGCTCTCGAATTTCGTTGAAGAGTCCTTTCCGGCGGAGGAGGAGCTGAAAACTCTTCACCTTATCTCCGGCGTGAAGCCTCAGACACCTCAATCGTCTTCTTCTTCGGATGCTCGAAACGCACCGTTATTCCACCCCGAAACGCCTCTCCCAGCCAAGGCACGAAGCAAGCGCTCACGCGCCGCGCCTGGTGATTGGTCCACGCGCGTGGTTCGGGTTGTTAAAACGGACGCGGAGCAAAGGCCCGCGAAGAAGAGAGATGGGGCGAATTCCGAGGCATCGGGCCGAAAATGCCTGCACTGCGCGGCGGAACAGACGCCGCAGTGGCGAACTGGGCCCATGGGCCCAAAGACATTGTGCAATGCATGCGGGGTAAGGTATAAATCTGGGAGGTTAGTGCCGGAGTACCGGCCCGCTGCAAGCCCAACGTTTGTGTCGACGAAGCATTCAAATTCGCATAGGAAGGTGTTGGAGCTGAGGAGGCAGAAGGAGATGCAGCATCACCGTTTGATTGGTCAGAGTTCGGTTTTCGACATATCCAACGGTGAAGATTCGTATTTGATTCATCGCCACAACCGTCCAGATTATAGGAACGTCTAA 927 0.5556 MELPEYFIAGYFAATPDQLSPEKRHADQKPGEVFTIDDLLDFSNANTDAITSDGFFNNTAGNSTDVSVVTAVDSCNSSISGSSFRCFAGVDPQFSEEFCVPYDDVAELEWLSNFVEESFPAEEELKTLHLISGVKPQTPQSSSSSDARNAPLFHPETPLPAKARSKRSRAAPGDWSTRVVRVVKTDAEQRPAKKRDGANSEASGRKCLHCAAEQTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVSTKHSNSHRKVLELRRQKEMQHHRLIGQSSVFDISNGEDSYLIHRHNRPDYRNV* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g1566 308 CDD ZnF_GATA 206 253 IPR000679 GO:0006355|GO:0043565
Amo07g1566 308 MobiDBLite consensus disorder prediction 181 202 - -
Amo07g1566 308 ProSiteProfiles GATA-type zinc finger domain profile. 201 237 IPR000679 GO:0006355|GO:0043565
Amo07g1566 308 PANTHER GATA TRANSCRIPTION FACTOR 9 1 283 - -
Amo07g1566 308 Pfam GATA zinc finger 207 240 IPR000679 GO:0006355|GO:0043565
Amo07g1566 308 ProSitePatterns GATA-type zinc finger domain. 207 232 IPR000679 GO:0006355|GO:0043565
Amo07g1566 308 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 203 265 - -
Amo07g1566 308 MobiDBLite consensus disorder prediction 134 204 - -
Amo07g1566 308 PANTHER GATA TRANSCRIPTION FACTOR 1 283 - -
Amo07g1566 308 MobiDBLite consensus disorder prediction 134 150 - -
Amo07g1566 308 PIRSF Txn_fac_GATA_plant 17 292 IPR016679 GO:0003677|GO:0005634|GO:0045893
Amo07g1566 308 SMART GATA_3 201 251 IPR000679 GO:0006355|GO:0043565
Amo07g1566 308 Gene3D - 201 251 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g1566 Amo-Chr7 42967870 42969020 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g1566 34 308 C2C2-Gata Transcription Factor Family AT4G32890 50.658 4.89e-84 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Amo07g1566 GATA 2.5e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g1566 - - gmx:100776605 417.927