Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g1554 ATGGATGCTGAAGACGAGGAAGCTCAACACCTACAACACTCTTATCCACTCCCATACCTCTCTACCACTTCACCACAATGCCACAGCACTGGAGTGGAGCCGGTTGATGCGGCCACCACCGCCGATAATAGAGAAACTCTTGTTGGAGAAGCGGAACAGGCGGCGGTTGCAGCCAATTCGGGCGAAGCGGTTGAAGAGGCGGTGGAGGAGACAGAGATTGGGGATTCGGGAAACGCAGGAGAAGGAGAAATGCAAGTGGTGGAAGATAAGGTTGTTGGCCCTGAGGTTGTAGTTAAGGGTGATGATGTGGAGAATGGAGAGGGCCAACAAGAAGAGGATGAGATTATGGTGGAGGCAACCGGCGTGGCGAAGATGGAAAAGGAGGAAGCTCCGTTGGTAGATGAGCACGAAATCAGGGATGGTGAGGATAACGTGGTGGAGCAGACGGAGGTACCAAATGAAGCTGCTTCCGTGGTAGAAAGAGAACAAGGGCAAGAAAAAGAAGATGCAGAAGAAGAACAGGAGGAGGAGGAGGAGGTGGAGAAGGAGGCGGGTGGGGAGCAAGAAGCTGATGCTGCTAGCGGTATGGCAAATGAAGCTGCTTTATTGGAAGAAGACGAGCAAGTACTAGGACAGCAGCACGAGAATGCAGGCGCCGATGTTGTTGTTGGTGGTGTAGCTAATGAATTCATCGAAGTGCACGAAGAAGGACAACAACAACAACAACAAGAGGAACAAGAGGATGCTGATGTTGGTGGTGGCTTGTTAAATGAAGCTGCTTTCATGGAAGAGCAAGAAGAAGCAGAGAAACAAGGAGAAGATGAAGAAGAAGAACAAGCTGCTGCCAGTGATGATATAGCAAATGAAGCTGCTTTGACAGTAGATCAGGAAGAAGAACAAGCCGATACTGGTGGTGATATGACAAATGAAGCTGCTTTCACGGATGAACATGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAGATGGCGGTGGCAGTGTTGGGCGCATGGGAGAAGAGACAGAGCCCACTWAAGRGACAGAAGAAACGGAGGAGCAGAGTAGAAGTGTGAGTGGTGGGAAGAGGAAGCGCGGAAGTGGGAAAAATTCAAAGTCCACAGGGAGAGCCCCATCAAGGAAAAAGATGGAAGAGGATGTTTGTTTCATTTGCTTCGACGGGGGTGAGCTTGTTCTTTGTGACCGCAGGGGGTGCCCAAAGGCTTACCATCCTTCTTGCGTTAATCGTGATGAGGCCTTCTTCCGATCCAAGGGTAAATGGAATTGTGGATGGCATATTTGCAGCAACTGTGAGAAGAATGCTTACTACATGTGTTATACATGTACGTTCTCTTTGTGCAAGGGATGCATCAAAGATGCTGTTATCTTATGTGTTAGGGGAAACAAGGGCTTTTGCGAGACATGCATGAGAACTGTAATGTTGATTGAACAGAACAATCATGAAAACATGGGACAAGTGGATTTTGATGACAGAAGCAGCTGGGAGTATCTCTTTAAGGACTATTACTTAGATCTAAAAGAAAAGCTATCYCTGACATTCGATGAACTCACACAAGCTAAAAATCCTTGGAAGGGATCTGATAGGCTTCCTTCTAAAGAGGAATCAGCAGATGAACTTTTYGATGCCAATAATGATAGAGGATCTGATTCAGATAGCTCATATGAGAATGTAGATTTGAGTCGTTCCAAAAGAAGAAAGGGCAAGAAGCGGACAAAGTCCCGTTCCAGGGAAGGGACTTCATATGCTTCTGTGGATGGAGCATCTGCAGATGAAAWCTCTGAGTGGGCTTCAAAAGAACTTTTGGAGTTTGTCATGCACATGAGAAATGGRGACAGATCCATTTTGTCACAGTTTGATGTGCAGGCTCTTCTGTTAGAGTATATTAAAAGAAATAAACTTAGAGATCCTCGTAGAAAAAGTCAAATCATTTGTGATACAAGGCTTCAAAATTTGTTTGGTAAACCAAGAGTGGGACATTTTGAAATGTTAAAGCTTCTTGAATCCCATTTCCTTCTAAAAGAAGATTCTCAAACTGATGATATGCAGGGAAGTGTTCTTGATACTGAAATTAGTCATTTGGAAGGTGATGGCAACTCTGATTCATATGTGAAAGCTGGCAAAGATAAGAGACGTAAAACTCGCAAAAAAGGTGATGAAAGAGGACTTCAAACYAATGTGGATGATTATGCTGCTATTGATAATCATAATGTTAATTTAATATATCTCCGACGTAATTTGGTGGAAGAGCTACTTGAAGATACAGAAAAGTTTCATGATAGAGTTGTTGGCGCTTTTGTGAGAATAAGGATTTCGGGTAGTGGCCAGAAGCAAGACTTGTACAGGCTGGTTCAGGTTGTAGGGACTTGCAAAGCATCAGAACCATATAAAGTTGGTAAAAGGATGACAGATTTCTTGCTAGAAATCTTAAATTTAAACAAGACAGAGATTGTATCCATTGATATTATCTCAAATCAGGAGTTCACAGAGGATGAATGCAAGCGACTCCGCCAAAGCATAAAATGCGGGCTCATAAATCGTCTGACACTGGGTGACATTCAGGAAAAAGCSTTGGCACTTCAGGCAGTTAGAGTGAATGATTGGTTAGAAACAGAGATAGTGCGGTTAAGTCATCTCCGTGACAGAGCCAGTGAGAAGGGACGCAGAAAAGAGCTCAGAGAGTGTGTTGAGAAGTTGCAACTTCTGAAGACTCCCGAAGAACGACAACGCAGATTGGAGGAAATTCCAGAAATTCAYGTGGATCCTAAAATGGATCCAAGTCATGARTCTGAAGAAGATGAAGATGAAATGGATGAAAAACGACAAGGTGAAAACTACATGAGACCTAGAGGACCTGCTGCATTTGGAAGGAGGGGGAGAGAGATTATTTCTCCTAGGAGTGGTCCTATTTCGAGTGATTCCTGGAGTGCGACACGGAATTATTCTARTGTGAATCGYGAACTTAGYAGAAATCTGTCKAACAAGGGGTTTTCAAGCAAAGGCGATGATGTTTCTATTGCTAATGAAGTACTAAATGATGCTCAATTACCCCAGGGAAGGGATTGGGGTTCACAATCTAGTGGCCTGGAGAGGCAGAAGCTATCTTCAAGCTTTGAAAGTGGTACTAAAAGTAACCAGCTGTTATCAACACCTGATYRTTTTTCTGCTGCTTTATCAGAAACTTCTGCAGTGTTGTCTTCTGTGGGAGCSGWTCYGCCAGCTATGAAAATAAATGAAAGTGAAAAAATGTGGCATTATCAGGATCCGTCTGGAAAAGTTCAGGGACCATTTTCTATGGTGCAGCTACGCAAATGGAGTAACACAGGGTACTTTCCTGCTGATTTGAGGATTTGGAAAGCCAGTGACAAGCAAGATCAGTCGATGCTCTTAACCGATGCCTTAGCAGGAAAATTTCCTACTGAACCATCAATGCTGGATAAAACTCCTGCTAAGGCTCAATCTGTGATTGATCCACATTACTCATCTTCATACTCTGGCAAGTCTCATTTGGCGGTACAAGCTATGGAAGGTCAAGCTGGAGGAAGACCATCATTTGATCATAATAGTGGATCACATAATCCTCTTKGTTCTCCTGGACAAAATGCTGGAGGAAGTTGGAGATCTAAAGATACCATGAATTCTTTAGCAAGTCGACCTTCATTGGCAGTTGAAGTTCCCAAGAATCTGGCAAATGGTTGGGGTTCTGATGCTGGACTCRGAAATGAAGCAACAAATCTTCCTTCACCTACACCCCAGACTGCTTCAGGTGGGACYAAGATGCAGGCTTTTGAAAATAAATGGTCTCCAACTCCAACCCCTGTCCTATTGGCTGGCTCTCTCTTAGGAAATTCACTCCCTGTTGGGCCTGAAAGTCGTTCAAGTTCACAACCTGGAATGATATCAGCTTCTAAATCAGATAATAATCAAGTACATGTTCATGCAGCRTTACCTGCGATTGCTTCRGGTGTTGACATTCAGACAGCAGGTGTACACTTGCAAAGTCAGAGTGTCAGTAACCATACCTCCCGTKCCGAAGGCCATCAAGGRTGGGGCTCYGGTACGGYTCCAAAGCCTGAAGTACAGACGTGGGGAGGTGCTCAACCTCAAAGGATAGAACCAAATAATCCAGTTACTATGCCTGCACAGCCAGCTTCCCATGGTCACTGGGTTGATACTACATCCGTCCAGAACTCTGCCTCATATAGCAATGGAAATCCTAATGGGGCCTTCTCTACACCGAGCTTTCCAGGCATGACTACACCTACACCTACACCTACACCTACACCTACACCTGAACCATGGAGACCGCCAAGTTCAAATAGTCAGTCAAACATAGCAGCAGCAGCACCATCCAATGTACCTTATGCTGGTTGGGGTATGCCAGGAAATCAGAATATTAACTGGAGTGGACCTYTACCTGCAAATGTGAACGTAAACTGGATGCCTGGACAGGGGCCAGGACCCAGTAATGCAACTCCAGTATGGGGTGCTCCTAGCCAGGGACCACCTGCGGCAAATGCTGTTGGCTGGGTTGCACCTGGTCAAGGACGTCCGCATGTAAATGCAAATGCAGGTTGGGTTGCACCTGGTCAAGGGCCAACGGTGGGAAGTACTAATCCTGGTTGGGGTTCTTCATCTGGAAATCCAGGCACGTGGGGTGGCGAGCAAAGTCGCAATGGGGAGAGATTCCACAGCCAGGGCGATCGTGGAACACATGGTGGAGATTCTGGTTATGGAGGTAAATCCTGGAACAGGCAATCATCATTTAATGGCAGCGGAAGAGGAGGTTCTTCCAGGCCTTCTGTTGGGGGACAAAGAGGAGTATGTAAGTTCCACGAGAGTGGACATTGCAAGAAGGGGGCTTCCTGTGATTTTATGCACACTTAA 4899 0.4511 MDAEDEEAQHLQHSYPLPYLSTTSPQCHSTGVEPVDAATTADNRETLVGEAEQAAVAANSGEAVEEAVEETEIGDSGNAGEGEMQVVEDKVVGPEVVVKGDDVENGEGQQEEDEIMVEATGVAKMEKEEAPLVDEHEIRDGEDNVVEQTEVPNEAASVVEREQGQEKEDAEEEQEEEEEVEKEAGGEQEADAASGMANEAALLEEDEQVLGQQHENAGADVVVGGVANEFIEVHEEGQQQQQQEEQEDADVGGGLLNEAAFMEEQEEAEKQGEDEEEEQAAASDDIANEAALTVDQEEEQADTGGDMTNEAAFTDEHEEEEEEEEEEDGGGSVGRMGEETEPTXXTEETEEQSRSVSGGKRKRGSGKNSKSTGRAPSRKKMEEDVCFICFDGGELVLCDRRGCPKAYHPSCVNRDEAFFRSKGKWNCGWHICSNCEKNAYYMCYTCTFSLCKGCIKDAVILCVRGNKGFCETCMRTVMLIEQNNHENMGQVDFDDRSSWEYLFKDYYLDLKEKLSLTFDELTQAKNPWKGSDRLPSKEESADELFDANNDRGSDSDSSYENVDLSRSKRRKGKKRTKSRSREGTSYASVDGASADEXSEWASKELLEFVMHMRNGDRSILSQFDVQALLLEYIKRNKLRDPRRKSQIICDTRLQNLFGKPRVGHFEMLKLLESHFLLKEDSQTDDMQGSVLDTEISHLEGDGNSDSYVKAGKDKRRKTRKKGDERGLQTNVDDYAAIDNHNVNLIYLRRNLVEELLEDTEKFHDRVVGAFVRIRISGSGQKQDLYRLVQVVGTCKASEPYKVGKRMTDFLLEILNLNKTEIVSIDIISNQEFTEDECKRLRQSIKCGLINRLTLGDIQEKALALQAVRVNDWLETEIVRLSHLRDRASEKGRRKELRECVEKLQLLKTPEERQRRLEEIPEIHVDPKMDPSHESEEDEDEMDEKRQGENYMRPRGPAAFGRRGREIISPRSGPISSDSWSATRNYSXVNRELSRNLSNKGFSSKGDDVSIANEVLNDAQLPQGRDWGSQSSGLERQKLSSSFESGTKSNQLLSTPDXFSAALSETSAVLSSVGAXXPAMKINESEKMWHYQDPSGKVQGPFSMVQLRKWSNTGYFPADLRIWKASDKQDQSMLLTDALAGKFPTEPSMLDKTPAKAQSVIDPHYSSSYSGKSHLAVQAMEGQAGGRPSFDHNSGSHNPLXSPGQNAGGSWRSKDTMNSLASRPSLAVEVPKNLANGWGSDAGLXNEATNLPSPTPQTASGGTKMQAFENKWSPTPTPVLLAGSLLGNSLPVGPESRSSSQPGMISASKSDNNQVHVHAALPAIASGVDIQTAGVHLQSQSVSNHTSRXEGHQGWGSGTXPKPEVQTWGGAQPQRIEPNNPVTMPAQPASHGHWVDTTSVQNSASYSNGNPNGAFSTPSFPGMTTPTPTPTPTPTPEPWRPPSSNSQSNIAAAAPSNVPYAGWGMPGNQNINWSGPLPANVNVNWMPGQGPGPSNATPVWGAPSQGPPAANAVGWVAPGQGRPHVNANAGWVAPGQGPTVGSTNPGWGSSSGNPGTWGGEQSRNGERFHSQGDRGTHGGDSGYGGKSWNRQSSFNGSGRGGSSRPSVGGQRGVCKFHESGHCKKGASCDFMHT* 1633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g1554 1632 SUPERFAMILY SWIB/MDM2 domain 599 676 IPR036885 -
Amo07g1554 1632 ProSiteProfiles GYF domain profile. 1085 1139 IPR003169 GO:0005515
Amo07g1554 1632 MobiDBLite consensus disorder prediction 1536 1564 - -
Amo07g1554 1632 CDD Bbox1 431 457 - -
Amo07g1554 1632 ProSiteProfiles Zinc finger C3H1-type profile. 1607 1632 IPR000571 GO:0046872
Amo07g1554 1632 PANTHER UNCHARACTERIZED 221 1632 - -
Amo07g1554 1632 Gene3D - 1086 1145 IPR035445 -
Amo07g1554 1632 ProSiteProfiles Plus3 domain profile. 736 869 IPR004343 GO:0003677
Amo07g1554 1632 MobiDBLite consensus disorder prediction 15 30 - -
Amo07g1554 1632 MobiDBLite consensus disorder prediction 125 375 - -
Amo07g1554 1632 MobiDBLite consensus disorder prediction 911 931 - -
Amo07g1554 1632 MobiDBLite consensus disorder prediction 1290 1308 - -
Amo07g1554 1632 CDD PHD5_NSD 385 430 - -
Amo07g1554 1632 MobiDBLite consensus disorder prediction 1159 1173 - -
Amo07g1554 1632 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 372 477 IPR013083 -
Amo07g1554 1632 MobiDBLite consensus disorder prediction 1371 1421 - -
Amo07g1554 1632 MobiDBLite consensus disorder prediction 267 283 - -
Amo07g1554 1632 MobiDBLite consensus disorder prediction 1288 1308 - -
Amo07g1554 1632 Pfam SWIB/MDM2 domain 602 675 IPR003121 -
Amo07g1554 1632 MobiDBLite consensus disorder prediction 688 725 - -
Amo07g1554 1632 ProSiteProfiles SWIB/MDM2 domain profile. 594 677 IPR003121 -
Amo07g1554 1632 MobiDBLite consensus disorder prediction 71 111 - -
Amo07g1554 1632 SMART rtf1 736 846 IPR004343 GO:0003677
Amo07g1554 1632 MobiDBLite consensus disorder prediction 313 329 - -
Amo07g1554 1632 CDD SWIB-MDM2_like 600 675 - -
Amo07g1554 1632 MobiDBLite consensus disorder prediction 1422 1440 - -
Amo07g1554 1632 Gene3D - 738 866 IPR036128 GO:0003677
Amo07g1554 1632 SUPERFAMILY FYVE/PHD zinc finger 382 435 IPR011011 -
Amo07g1554 1632 MobiDBLite consensus disorder prediction 529 589 - -
Amo07g1554 1632 MobiDBLite consensus disorder prediction 1584 1603 - -
Amo07g1554 1632 MobiDBLite consensus disorder prediction 1022 1050 - -
Amo07g1554 1632 MobiDBLite consensus disorder prediction 1245 1271 - -
Amo07g1554 1632 MobiDBLite consensus disorder prediction 1142 1216 - -
Amo07g1554 1632 Pfam GYF domain 1088 1129 IPR003169 GO:0005515
Amo07g1554 1632 ProSitePatterns Zinc finger PHD-type signature. 386 446 IPR019786 -
Amo07g1554 1632 MobiDBLite consensus disorder prediction 1 41 - -
Amo07g1554 1632 MobiDBLite consensus disorder prediction 1188 1216 - -
Amo07g1554 1632 MobiDBLite consensus disorder prediction 1013 1050 - -
Amo07g1554 1632 Coils Coil 156 190 - -
Amo07g1554 1632 MobiDBLite consensus disorder prediction 1235 1271 - -
Amo07g1554 1632 Pfam Plus-3 domain 741 844 IPR004343 GO:0003677
Amo07g1554 1632 Gene3D SWIB/MDM2 domain 589 685 IPR036885 -
Amo07g1554 1632 MobiDBLite consensus disorder prediction 531 550 - -
Amo07g1554 1632 CDD GYF 1085 1140 IPR003169 GO:0005515
Amo07g1554 1632 SMART swib_2 602 680 IPR019835 -
Amo07g1554 1632 Coils Coil 258 285 - -
Amo07g1554 1632 SMART gyf_5 1086 1141 IPR003169 GO:0005515
Amo07g1554 1632 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 19 221 1632 - -
Amo07g1554 1632 SUPERFAMILY GYF domain 1079 1138 IPR035445 -
Amo07g1554 1632 SUPERFAMILY Plus3-like 737 866 IPR036128 GO:0003677
Amo07g1554 1632 MobiDBLite consensus disorder prediction 1483 1615 - -
Amo07g1554 1632 MobiDBLite consensus disorder prediction 1340 1466 - -
Amo07g1554 1632 SMART PHD_3 385 431 IPR001965 -
Amo07g1554 1632 ProSiteProfiles Zinc finger PHD-type profile. 383 449 IPR019787 -
Amo07g1554 1632 MobiDBLite consensus disorder prediction 166 185 - -
Amo07g1554 1632 MobiDBLite consensus disorder prediction 911 980 - -
Amo07g1554 1632 MobiDBLite consensus disorder prediction 125 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g1554 Amo-Chr7 42740910 42751457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g1554 383 470 PHD Transcription Factor Family AT5G36670 34.000 1.38e-06 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Amo07g1554 Plus-3 6.7e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g1554 - - aip:107608758 2860.09