Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g1513 ATGGATGGTCTGAGTTGGGATCCTTCTTCACAACTTGCTGTTAATAACATACCAATGTTGGAAGGAGAAGAAGACTACTCCATCTTTGTTAATAATCACATGCAAGAGATGCACAAGTCTCATCATCGTCATGGATATCCAAATTCTGAAAAAGTGATGATGATGATGAGCAACATGGTTCAGTACCCATCATCAGCAACACCAGAAGCTGAGATTGTGAGTTTTCCACAGAGAACAAGAAACAACAACAACAATTTTAGTATGGCGGTGAAATCATCATCATCATCATCAACCGGTTGGGATGTAAAAGAAGCCTTAACATCTAATCACCAATCATGGCCATCACTTTCAGTAGTCAATTATGTGCCAGATTTCAATATGGCCCACCACCACCACCACCAACAACAACAACAACTCATCAACAGCACAACACAATCATCATCATCCCTTGAATCACTCGATTGCCTGCTTTCAGCTACCAACAGCAACACAGACACTACTACTGCTACTACTTCTCTTGAAGAAGATGATGGCATCTCCATCATTCTATCTGACTGCAGAAACTTCTGGAACTTCACTACTAATTATGGAGCCATCACTGCTGCTGCTGCTGCTTCCTCTGCTGAATCTGAAACCAATAATGTTTCCAACAAACAGAACAACATGCAATATCATCATCACCATCATCAGATCAATAATAAGGAGCTCGATGAAACAGTATCTCAAGCTTCAAAGAGGACAATCAATGACCAATATGACCTTATCAAAACTTCTTCTTCTGCTGCTGCAACCACCACCACTGGTCCCTACTTCAGTATCTTCCACAATTCTTCTTCTTCCGCCACTGAAAGCGGCGCCTTCAAGCTTATCAAAGAGAATCCTCTACCAAGATCCAAGAAACCAAGATGGGAGAATAACAACAACAACAACAACAACAATAAGCATGGTGGTTCATCATCCAACATCAACTTCCAGCAGCCGAATTCATCGCATTCCACCATTGACGAACCAGATCCAGAGGCCATTGCACAGATGAAGGAGATGATATATAGAGCTGCGGCATTTCGGCCTGTGAACTTGGGATTGGAGGTTGCGGAGAAGCCGAAGAGGAAGAACGTGAAGATATCAAGCGATCCTCAAACGGTAGCTGCAAGGCAAAGAAGGGAGAAAATAAGTGAAAGAATTAGGGTTTTGCAGAAGATTGTTCCTGGTGGAAGCAAGATGGACACAGCTTCAATGCTTGATGAAGCTGCTAACTACCTCAAGTTTCTTAGGTCACAGGTCAAAGCTCTTGAAAGCTTAGGGAACAAGCTTGACACCATGAATAATCATAATGTTCCTCCTACCACCACCATTGCTTTCTCTTTCAACCCTTCTTTTCCCATCATGCCATCTTATTTTCCCAACCCTAAACCCTAG 1419 0.4249 MDGLSWDPSSQLAVNNIPMLEGEEDYSIFVNNHMQEMHKSHHRHGYPNSEKVMMMMSNMVQYPSSATPEAEIVSFPQRTRNNNNNFSMAVKSSSSSSTGWDVKEALTSNHQSWPSLSVVNYVPDFNMAHHHHHQQQQQLINSTTQSSSSLESLDCLLSATNSNTDTTTATTSLEEDDGISIILSDCRNFWNFTTNYGAITAAAAASSAESETNNVSNKQNNMQYHHHHHQINNKELDETVSQASKRTINDQYDLIKTSSSAAATTTTGPYFSIFHNSSSSATESGAFKLIKENPLPRSKKPRWENNNNNNNNNKHGGSSSNINFQQPNSSHSTIDEPDPEAIAQMKEMIYRAAAFRPVNLGLEVAEKPKRKNVKISSDPQTVAARQRREKISERIRVLQKIVPGGSKMDTASMLDEAANYLKFLRSQVKALESLGNKLDTMNNHNVPPTTTIAFSFNPSFPIMPSYFPNPKP* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g1513 472 MobiDBLite consensus disorder prediction 293 336 - -
Amo07g1513 472 MobiDBLite consensus disorder prediction 300 335 - -
Amo07g1513 472 CDD bHLH_AtIND_like 376 434 - -
Amo07g1513 472 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 375 424 IPR011598 GO:0046983
Amo07g1513 472 PANTHER TRANSCRIPTION FACTOR BHLH87 88 469 - -
Amo07g1513 472 Gene3D - 380 446 IPR036638 GO:0046983
Amo07g1513 472 Coils Coil 414 434 - -
Amo07g1513 472 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 88 469 IPR045843 GO:0003700|GO:0006355
Amo07g1513 472 SMART finulus 381 430 IPR011598 GO:0046983
Amo07g1513 472 Pfam Helix-loop-helix DNA-binding domain 385 424 IPR011598 GO:0046983
Amo07g1513 472 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 381 442 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g1513 Amo-Chr7 41495284 41497150 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g1513 134 472 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 47.661 1.85e-83 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo07g1513 HLH 1.5e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g1513 - - aip:107612801 781.556