Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g1499 ATGTCTCTGCCTTCATTTGTTATGGTTATCTACTCTTCCTTCCACTTTCTGACCCTCTTTCTGAACAGAACTGCTCCAGGTCCAGTAGTGGGTTGGCCTCCAATCCGTTCATTCAGGAAGAACCTTGCAAATAGCAGCAGCTCTTCAAAGCCACCTCCTCCTCCTCCTGAGCACCATAGCAAGGTGGTGGTTGGTGGAAAAGGCATGTTTGTCAAGATCAACATGGATGGTGTTCCCATTGGTAGAAAAGTTGACCTCAATGCTTACGATAGCTATGAAAATCTCTCCAATGCTGTGGACCAACTCTTCARAGGCCTTCTTGCTGCTCAAAGAGATTCCTCTGGTGGTGGAGTTAACAAGCTACAAGAGGAAGAGAAAGTGATAACAGGTTTATTAGATGGAAGTGGAGAGTATACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCACATGTTCGTATCAACAGTGAAGAGGCTGCGAGTCTTGAAGAGTTCTGAGCTTTCTGCCTTTACCCTTGGTGGTAAGCAAGACAAAGATGCAACTTGA 570 0.4544 MSLPSFVMVIYSSFHFLTLFLNRTAPGPVVGWPPIRSFRKNLANSSSSSKPPPPPPEHHSKVVVGGKGMFVKINMDGVPIGRKVDLNAYDSYENLSNAVDQLFXGLLAAQRDSSGGGVNKLQEEEKVITGLLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSELSAFTLGGKQDKDAT* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g1499 189 Pfam AUX/IAA family 23 177 IPR033389 -
Amo07g1499 189 MobiDBLite consensus disorder prediction 41 61 - -
Amo07g1499 189 SUPERFAMILY CAD & PB1 domains 65 169 - -
Amo07g1499 189 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 24 185 IPR003311 GO:0005634|GO:0006355
Amo07g1499 189 Gene3D - 64 183 - -
Amo07g1499 189 ProSiteProfiles PB1 domain profile. 68 172 IPR000270 GO:0005515
Amo07g1499 189 PANTHER AUXIN-RESPONSIVE PROTEIN IAA26 24 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g1499 Amo-Chr7 41314317 41315572 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g1499 71 183 B3 DNA Binding Superfamily AT4G23980 33.628 2.42e-15 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Amo07g1499 AUX_IAA 2.4e-64 CL0072