Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g1448 ATGCCTGACTCACCTGGGAGGAAGCATAACTTAGGAGAGCTTCTTAAGTCAGATCCTGGTGGTCATAGTTCTGAAAATTCAAGAAACAATTCACCAACTCATCCTATTATAAGGGTGAATCAAGCAGCAAAAGATGGCAGTGCAACCAACAATTCAACAACCGAAGCTGCACATATGGAAGAGGTTTCTAAAAACAATGCGAAAAGTAAATCTAGACCTCARAGATTAGCATCAATAACAAAAAATGTTGCTGAACCCGGCACTCAACGCCATAGTCCACGCGCCAAGACAAACTCAATTTATGATGTTGCAGTTACCTCACCAGGGCGGCCGCCTGCGACTTCTTCGAGGGGAGTGTACCAAGGTGCATCGAGCAACTCTAGCTCGCGCAGCAATAGTTTAGAGAGCACCAGCACACCCCTCAGACCACATACCGGTGGCGATTGTAGATGGGAAGCAATTAACTTGGCTACCAAGGCAGGCCCTCTAAATCTTAGCAATTTCAGGCTTCTCAAGCGTATTGGTTATGGAGATATCGGAAGCGTATATCTCGCGGAACTTAAAGGAAGTAAGACCTACTTTGCCATGAAAGTAATGGACAAGGCTGCACTTATTAGCAGAAACAAGCTTCTGAGAGCACAGACAGAGAGAGAGATTCTTGGACTTCTAGATCACCCCTTCTTGCCCACATTATATTCTTATTTCGAAACAGATAAATTATACTGTTTGGTCATGGAGTTCTGTAGTGGAGGTGATCTCCATTCTCTTAGACAGAAGCAACCTAACAAGTGTTTCACTGAAGAGGCTGCAAGGTTTTATGCTTCAGAGGTTCTGTTAGCTCTTGAGTATCTGCACATGCTTGGCATTGTATATAGAGATTTAAAGCCAGAAAATCTTTTAGTCAGAGATGAAGGCCATATCATGCTCTCGGATTTCGACTTATCACTTCGCTGTTCGGTCAATCCTACACTTGTCAAGTCTTCATCTGCGCACGCAAACAATGGTAGTAGTAGCGGCGACTCTGGCAGCACAGTAGGTGATGAACAAGCATCACAAAGTAGTGCAACATCAACCTTCTTCCCACGCATTTTGCCTTCAAAGAAGAACAGGAAGGCAAAATCAGATTTCGGCCTATTGGTCGGTGGAAACCGCCTGCCTGAACTGATGGCAGAGCCGACCAATGTGCGCTCGATGTCATTTGTAGGGACCCATGAATATCTAGCACCTGAGATTATCAAAGGAGAAGGTCATGGTAGTGCAGTAGATTGGTGGACTTTTGGGATATTCTTGTATGAGCTGTTGCATGGAACAACCCCTTTTAAAGGCCAAGGATATAAGGCCACACTTTACAATGTTGTTGGCCAGCCATTGAGGTTCCCGGAAAATCCACAGGTTAGTCAGGTRGCKCGAGACCTTATAAAAGGATTGTTGGTGAAGGAACCTCAGAACAGAATTGCATATAAAAGGGGTGCCACAGAGATAAAGCAGCACCCATTTTTTGAGGGAGTGAACTGGGCTCTAGTTAGAAGTGCCGTGCCTCCTCATATACCRGACCCTATTGACTTCTCAAAGTATGCTAGCAAAGACACACCACCACCAGCACCGGCACCGGCATCTGAGAAGAAGGTGGCAGATAATGTTGCTAGTAATAAAAAGAACAACAGTGCTACTGATTCTTCATATGTAGATTTTGAGTATTTTTAG 1704 0.4454 MPDSPGRKHNLGELLKSDPGGHSSENSRNNSPTHPIIRVNQAAKDGSATNNSTTEAAHMEEVSKNNAKSKSRPQRLASITKNVAEPGTQRHSPRAKTNSIYDVAVTSPGRPPATSSRGVYQGASSNSSSRSNSLESTSTPLRPHTGGDCRWEAINLATKAGPLNLSNFRLLKRIGYGDIGSVYLAELKGSKTYFAMKVMDKAALISRNKLLRAQTEREILGLLDHPFLPTLYSYFETDKLYCLVMEFCSGGDLHSLRQKQPNKCFTEEAARFYASEVLLALEYLHMLGIVYRDLKPENLLVRDEGHIMLSDFDLSLRCSVNPTLVKSSSAHANNGSSSGDSGSTVGDEQASQSSATSTFFPRILPSKKNRKAKSDFGLLVGGNRLPELMAEPTNVRSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLHGTTPFKGQGYKATLYNVVGQPLRFPENPQVSQVARDLIKGLLVKEPQNRIAYKRGATEIKQHPFFEGVNWALVRSAVPPHIPDPIDFSKYASKDTPPPAPAPASEKKVADNVASNKKNNSATDSSYVDFEYF* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g1448 567 Pfam Protein kinase domain 375 500 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo07g1448 567 Pfam Protein kinase domain 169 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo07g1448 567 MobiDBLite consensus disorder prediction 327 356 - -
Amo07g1448 567 ProSiteProfiles Protein kinase domain profile. 168 500 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo07g1448 567 SMART serkin_6 168 500 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo07g1448 567 MobiDBLite consensus disorder prediction 1 145 - -
Amo07g1448 567 CDD STKc_phototropin_like 166 521 - -
Amo07g1448 567 PANTHER SERINE/THREONINE-PROTEIN KINASE AGC1-5 39 567 - -
Amo07g1448 567 SUPERFAMILY Protein kinase-like (PK-like) 165 528 IPR011009 -
Amo07g1448 567 MobiDBLite consensus disorder prediction 69 143 - -
Amo07g1448 567 Gene3D Transferase(Phosphotransferase) domain 1 394 518 - -
Amo07g1448 567 MobiDBLite consensus disorder prediction 20 60 - -
Amo07g1448 567 MobiDBLite consensus disorder prediction 522 567 - -
Amo07g1448 567 Gene3D Phosphorylase Kinase; domain 1 166 251 - -
Amo07g1448 567 Gene3D Transferase(Phosphotransferase) domain 1 252 322 - -
Amo07g1448 567 ProSitePatterns Serine/Threonine protein kinases active-site signature. 289 301 IPR008271 GO:0004672|GO:0006468
Amo07g1448 567 PANTHER FLIPPASE KINASE 1-RELATED 39 567 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g1448 Amo-Chr7 39816253 39818770 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g1448 134 567 AGC Kinase Gene Family AT1G79250 73.378 0.0 666
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Amo07g1448 Pkinase 9.8e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g1448 - - ahf:112703041 979.933