Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g1447 ATGGCGTTTCAGAAGATAAGGGTTGACAACCCCATCGTTGAAATGGACGGAGATGAAATGACTCGGGTAATTTGGAAGCTGATAAAAAATAAGCTTATTTTCCCTTATTTGGAGCTCGATATTAAGTATTTTGACCTAGGACTTCCTCATCGGGATGCCACTAATGACAGAGTTACCATCGAAAGTGCTGAAGCKACACTCAAGTATAATGTAGCAATCAAATGTGCAACTATAACTCCTGACGAAGCTCGTGTCAAGGAGTTCAACTTAAAGCAAATGTGGAGAAGTCCAAATGGAACAATCCGAAACATTTTAAATGGTACGGTTTTTAGAGAGCCAATCATCTGTAAAAACATTCCGCGTCTTGTTTCAGGCTGGACAAAGCCAATATGCATTGGAAGGCATGCTTTTGGAGACCAATATCGGGCAACTGATATTGTTATAAAGGGCCCAGGAAAGCTGAAACTGATGTTCGTACCCAATGGACATGGAGAACATAAAGATTTAGAAGTCTATAATTTTACTGGTGCTGGAGGCGTAGCTTTGTCAATGTATAATACTGATGAGTCCATCCGAGCTTTTGCTGAGGCATCGATGAACATTGCTCACCAGAAAAAATGGCCACTCTATCTTAGCACTAAAAATACCATTTTAAAAAAATATGATGGAAGATTCAAGGACATTTTTCAGGAAGTTTTTGACACTCAATGGAGGCACAAGTTCAAAGAGGCTGGGATATGGTATGAACATCGTCTCATAGATGATATGGTTGCCTATGCTCTTAAAAGTGATGGAGGGTATGTATGGGCCTGCAAGAATTATGATGGGGATGTGCAGAGTGATTTCTTGGCTCAAGGATTTGGTTCTCTTGGCTTGATGACATCAGTGCTGGTTTGCCCAGATGGGAAAACCATTGAAGCTGAGGCAGCACATGGCACTGTTACCCGTCATTACCGGGTTCATCAGAAGGGAGGTGAAACCAGCACAAACAGTATAGCATCAATTTTTGCCTGGTCTCRAGGTCTTGCGCATAGGGCAAAGTTGGATGGAAATGCTAGATTGTTGGACTTCACAGAGAAACTGGAAGCAGCTTGCATTGGAACAGTGGAATTGGGAAAGATGACAAAGGATCTTGCACTTCTTGTCCATGGGCCTAAGGTTACTAGGTCTCACTATCTAAATACTGAAGAGTTCATTGATGCAGTAGCTGAGGAGCTGAAAACTAGATTATCTATGCAGGCAAAGCTATAA 1251 0.4173 MAFQKIRVDNPIVEMDGDEMTRVIWKLIKNKLIFPYLELDIKYFDLGLPHRDATNDRVTIESAEATLKYNVAIKCATITPDEARVKEFNLKQMWRSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDIVIKGPGKLKLMFVPNGHGEHKDLEVYNFTGAGGVALSMYNTDESIRAFAEASMNIAHQKKWPLYLSTKNTILKKYDGRFKDIFQEVFDTQWRHKFKEAGIWYEHRLIDDMVAYALKSDGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSXGLAHRAKLDGNARLLDFTEKLEAACIGTVELGKMTKDLALLVHGPKVTRSHYLNTEEFIDAVAEELKTRLSMQAKL* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g1447 416 PIRSF IDH_NADP 1 413 IPR004790 GO:0004450|GO:0006102
Amo07g1447 416 TIGRFAM nadp_idh_euk: isocitrate dehydrogenase, NADP-dependent 4 411 IPR004790 GO:0004450|GO:0006102
Amo07g1447 416 PANTHER ISOCITRATE DEHYDROGENASE [NADP] 1 415 - -
Amo07g1447 416 Gene3D Isopropylmalate Dehydrogenase 3 415 - -
Amo07g1447 416 SMART Iso_dh_2 11 402 IPR024084 -
Amo07g1447 416 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 3 410 - -
Amo07g1447 416 Pfam Isocitrate/isopropylmalate dehydrogenase 8 402 IPR024084 -
Amo07g1447 416 ProSitePatterns Isocitrate and isopropylmalate dehydrogenases signature. 273 292 IPR019818 GO:0000287|GO:0016616|GO:0051287
Amo07g1447 416 PANTHER NADP-SPECIFIC ISOCITRATE DEHYDROGENASE 1 415 IPR004790 GO:0004450|GO:0006102
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g1447 Amo-Chr7 39810815 39815484 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g1447 K00031 - gmx:606295 803.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g2758 18 117260730 117265416 Amo07g1447 07 39810815 39815484 hybridization