Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g1419 GAAGATGCCTTGAAGGCATTACAGGAAAAGGAAAAAGAACCGGCTATACCTGAACCGGAACCAGAGCCAACTACTGAAGTGCTTTTTCTTTGCAACTATGAAGGATGTGGAAAGACGTTCATTGATGCTGGTGCATTGAGGAAATATTCTCCCATTCATGAAGAGAGACAATTTATTTGTCATTATGAGGGGTGCGGAAAGAAATTTCTTGATAGGTCAAAGTTGAAAAGACATTTTCTCATTCACACAAGGGAGAGTGATTTTATATGTCCTCATGAAGGCTACGGTAAGTATGACAATTGTTGA 306 0.3954 EDALKALQEKEKEPAIPEPEPEPTTEVLFLCNYEGCGKTFIDAGALRKYSPIHEERQFICHYEGCGKKFLDRSKLKRHFLIHTRESDFICPHEGYGKYDNC* 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g1419 101 MobiDBLite consensus disorder prediction 1 19 - -
Amo07g1419 101 SUPERFAMILY beta-beta-alpha zinc fingers 53 94 IPR036236 -
Amo07g1419 101 SMART c2h2final6 29 53 IPR013087 -
Amo07g1419 101 SMART c2h2final6 58 82 IPR013087 -
Amo07g1419 101 Gene3D Classic Zinc Finger 25 99 - -
Amo07g1419 101 ProSiteProfiles Zinc finger C2H2 type domain profile. 29 58 IPR013087 -
Amo07g1419 101 MobiDBLite consensus disorder prediction 1 23 - -
Amo07g1419 101 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 10 97 - -
Amo07g1419 101 ProSitePatterns Zinc finger C2H2 type domain signature. 60 82 IPR013087 -
Amo07g1419 101 PANTHER TRANSCRIPTION FACTOR YY1-RELATED 10 97 - -
Amo07g1419 101 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 87 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g1419 Amo-Chr7 38385862 38386335 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g1419 1 97 C2H2 Transcription Factor Family AT4G06634 70.103 6.85e-34 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo07g1419 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g1419 - - zju:107403391 160.229