Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g1366 ATGATATATTGTGGGTCTTATGATACCTTAAGGACTTTGATACATTTGAAATGTGGTGGTGCTGATGGGATCACAAAACTGAGCAAAATGACAGAAGTTGTAGCAGAACTCGATTTGAATCAACAGCCTTTGCATGACATAGAACAGCGAATTAGACGCCTAGAAGGCATAATTTTCAGAGTTAGGCAGCGGCAGAGGTGGTGCCGTAGTGATAGTCCTGTCCGAATGACTACATTCACCGGAGAAGTGTTGGTTGATGGGGTTCAAGATGAAGGCAGACCACAGCTGGAAGAAGTAGAGGCCGGAGATGATGTCAAAGAAAATGGTAATGTGGAAAGCAGCAGTTGTAGGGGCAAAAGGAAGGCATCTGCATATTTGGTTGCTAAGGCGCTGGGGATGGAAACTAACACCGATAAGGCAAAGGGACGCGCAGGAAACTATTTTGATTGTAACATATGCTTGAAAATGGCAAGAGATCCTGTTTTGACTTGCTGCGGTCACTTGTTCTGCTGGCCCTGCTTCTTTCGCTTGTCGTATGCTTATGCAAATGCTAGGGAATGCCCTGTATGTGAAGGAGAGGTCATGATCACATGCATTACTCCAATTTATGGATCTGTAGGTGTCAATGACAGTGATCAGCTAGAATCAGAAGAGAATGGTTGTGAAATTCCTGCTCGACCTTGTGCGCGCAGAGTGAAGGTTAGCAAGGTGAAGTGTTTCAGAAACCGTGGTTTTCCAATAAATAATCCCCGTACTTCAGCTCAAAGTTCAAGTACAGTAATCCAAGGAATCGCCTTACTTTCACCGCCAATCACTCCGCCGCAAAGACCTTTAGAGGGACTTGATTCCTATCTTGGAAGTGACTCTGAAGGAAGCACCATGCAGCTGAATCATAATGCTGCTTCGAACCATTCAGAGTCACATAATCAAAATGTTATTGCTGCAGCCGCCACATCTTCTGTTACTCCTTTGACTATGAATGATGATGCTATTGCTATTACAGATTCCAGTACACAAATCACCAATAGTAGTGGACAGATTATTTCTTCCGACCGTTCATCTCTAGTCGAATTGATGTAG 1080 0.4398 MIYCGSYDTLRTLIHLKCGGADGITKLSKMTEVVAELDLNQQPLHDIEQRIRRLEGIIFRVRQRQRWCRSDSPVRMTTFTGEVLVDGVQDEGRPQLEEVEAGDDVKENGNVESSSCRGKRKASAYLVAKALGMETNTDKAKGRAGNYFDCNICLKMARDPVLTCCGHLFCWPCFFRLSYAYANARECPVCEGEVMITCITPIYGSVGVNDSDQLESEENGCEIPARPCARRVKVSKVKCFRNRGFPINNPRTSAQSSSTVIQGIALLSPPITPPQRPLEGLDSYLGSDSEGSTMQLNHNAASNHSESHNQNVIAAAATSSVTPLTMNDDAIAITDSSTQITNSSGQIISSDRSSLVELM* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g1366 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 260 IPR013083 -
Amo07g1366 359 CDD RING-HC_AtRMA_like 148 192 - -
Amo07g1366 359 ProSiteProfiles Zinc finger RING-type profile. 150 191 IPR001841 -
Amo07g1366 359 SMART ring_2 150 190 IPR001841 -
Amo07g1366 359 Pfam zinc-RING finger domain 150 191 IPR001841 -
Amo07g1366 359 SUPERFAMILY RING/U-box 146 196 - -
Amo07g1366 359 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 38 293 - -
Amo07g1366 359 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 38 293 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g1366 Amo-Chr7 36520548 36522544 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g1366 107 233 C3H Transcription Factor Family AT3G58030 42.520 2.80e-28 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g1366 K10666 - gmx:100778919 192.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g2686 18 114215478 114217157 Amo07g1366 07 36520548 36522544 hybridization