Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g1365 ATGGAGCTTGGATTAAGCTTAGGAGACTCTTCAAGGCCTTTCGTTGGGTTCATGGAAAAGCCTCGTAGTGAACCTTCTTCCAACCAACTTGGATTAGGCTTCACCACCACCACCTTGTCCATTGGACCAATCATCACTACTAAAAGACAAAGGGATCAACAAGAACAACAACTACAACAACAGGAACATGAAGATAAAGAAGAAGCAAAACCAAAGGACGACAACCCTCATCTTCATCAGCTTGATTTCCTTCCTCAGCTCTCTCTCCCATGGCACCCTTCTGAAAACGGTAGAGTGTCAAAAGGTTTGGACGTAAACGTGCTGCCGCTGACAACCGTGGCGGCGACGGCGGCGGCAGGGGCAGATGATGAGGTTGAGGAAGGGGAGGCGCTGTCATCGTCCCCGAATAGCGCAGCGTCTTCCTTTCAGACGGATCTATGCATATTTGGTGGCGGTGGTAGTTACAGCGGTGGTTCGGGAGGAAACTATTACAACTACGGTGGGAAAAGAGATCACTCTGATGGCGAGGGTTATGATCACCAAAGGGATTGTTCAAGAGCAAGCGACGAAGATGAAAACTGCGGCCGTGGCGGCGGCACAAGGAAGAAACTCAGGCTCTCCAAGGAACAATCCGCTTACCTTGAGGAGAGCTTCAAAGAGCACAACACTCTTAACCCTAAACAAAAGCTTGCTCTTGCTAAACAACTCAATCTTCGGCCTCGCCAAGTTGAAGTCTGGTTTCAAAACAGAAGAGCAAGGACAAAGCTGAAGCAAACTGAGGTGGATTGTGAGTATTTGAAGAGGTGCTGTGAGACACTAACAGAAGAGAACAGAAAGCTTCACAAGGAGCTTCAAGAATTGAGGGCTCTAAAGACTTCAAACCCATTCTACATGCAGTTACCGGCAACAACGTTGACCATGTGCCCTTCTTGTGAGCGTGTTGCTACAAATCCTTCTTCAAATAATTCTGCCTCACCAACTCCTCCTTCTAATAATAATTCTAACAATAATAATATTATTAATAGTAATAATGACTCAAATTCAAAGGTCATTGGATTCCCTCTTGGGAAACACACGTTTCATCCTTTTGCTCACACCACACAACAGCAACAACATCATCCACATCAGTCCACAGCATCGTGA 1143 0.4628 MELGLSLGDSSRPFVGFMEKPRSEPSSNQLGLGFTTTTLSIGPIITTKRQRDQQEQQLQQQEHEDKEEAKPKDDNPHLHQLDFLPQLSLPWHPSENGRVSKGLDVNVLPLTTVAATAAAGADDEVEEGEALSSSPNSAASSFQTDLCIFGGGGSYSGGSGGNYYNYGGKRDHSDGEGYDHQRDCSRASDEDENCGRGGGTRKKLRLSKEQSAYLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRKLHKELQELRALKTSNPFYMQLPATTLTMCPSCERVATNPSSNNSASPTPPSNNNSNNNNIINSNNDSNSKVIGFPLGKHTFHPFAHTTQQQQHHPHQSTAS* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g1365 380 MobiDBLite consensus disorder prediction 119 139 - -
Amo07g1365 380 MobiDBLite consensus disorder prediction 22 54 - -
Amo07g1365 380 SUPERFAMILY Homeodomain-like 188 258 IPR009057 -
Amo07g1365 380 MobiDBLite consensus disorder prediction 1 79 - -
Amo07g1365 380 Pfam Homeodomain 201 255 IPR001356 GO:0003677
Amo07g1365 380 Coils Coil 44 64 - -
Amo07g1365 380 CDD homeodomain 201 258 IPR001356 GO:0003677
Amo07g1365 380 SMART HOX_1 199 261 IPR001356 GO:0003677
Amo07g1365 380 MobiDBLite consensus disorder prediction 172 201 - -
Amo07g1365 380 Gene3D - 205 255 - -
Amo07g1365 380 SMART halz 257 300 IPR003106 GO:0006355|GO:0043565
Amo07g1365 380 MobiDBLite consensus disorder prediction 55 79 - -
Amo07g1365 380 ProSiteProfiles 'Homeobox' domain profile. 197 257 IPR001356 GO:0003677
Amo07g1365 380 Coils Coil 270 293 - -
Amo07g1365 380 MobiDBLite consensus disorder prediction 315 350 - -
Amo07g1365 380 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 1 343 - -
Amo07g1365 380 Pfam Homeobox associated leucine zipper 257 291 IPR003106 GO:0006355|GO:0043565
Amo07g1365 380 ProSitePatterns 'Homeobox' domain signature. 232 255 IPR017970 GO:0000981|GO:0006355
Amo07g1365 380 PANTHER - 1 343 - -
Amo07g1365 380 MobiDBLite consensus disorder prediction 315 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g1365 Amo-Chr7 36440505 36443845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g1365 184 314 Homeobox Transcription Factor Family AT4G37790 74.809 7.79e-66 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Amo07g1365 Homeodomain 2.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g1365 K09338 - gmx:100778742 394.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g2685 18 114034913 114037934 Amo07g1365 07 36440505 36443845 hybridization