Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g1349 ATGGCCACTTCCGCCGCCACCACAACCGCTGCTGCGCCGCGCCAGCTCTCTCAGAAGGAGCAAGACATCCAGATGATGCTTGCGGCTGAGGTGCATTTGGGAACCAAAAACTGCGACTTCCAGATGGAACGCTATGTCTTCAAACGCCGCAATGATGGTATTTACATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAACTTGCTGCTAGGATTATTGTCGCCATCGAGAACCCGCAGGATATCATTGTTCAGTCTGCTAGGCCATATGGTCAGAGGGCAGTCTTGAAATTTGCCCAATACACCGGTGCAAATGCGATTGCTGGAAGGCACACTCCTGGAACATTCACTAATCAGATGCAGACATCCTATAACGAGCCTCGCCTTCTCATTCTGACTGATCCAAGGACTGATCATCAGCCGATTAAGGAAGGTGCTCTTGGAAATATTCCAACCATTGCCTTTTGCGACACTGATTCTCCAATGCGGTATGTTGATGTTGGCATTCCTGCCAATAATAAGGGGAAGCACAGTATTGGTTGTCTTTTTTGGCTATTAGCAAGGATGGTTTTGCAGATGAGGGGTATTATTCGTCCAGGGCTTAAATGGGATGTGATGGTGGATCTATTCTTCTATAGAGAACCTGAGGAGGCCAAGCAACAAGAGGAGGAGGAAGCACCAGCTGCCCCAGAATATGCCATTCAGGACTTCGGTGCTGCTGGCATTGCCGGTTTCCCCACAGCTGATGGTGAATGGGCGGTTGTCACAGAACAACCCTGGCCCGAGGCAGTTCCACAACAACCTATTGCAGCTGCGCCTGCTGATTGGGCCCCAGATGCTTCTGCAGGTGATTGGGAACCGGTTCCAGCTCCTCAGCCTTCCGTTCCGGCACCCGGAGCCGTTGGTCCCACTGGTTGGGAATAG 924 0.513 MATSAATTTAAAPRQLSQKEQDIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQLAARIIVAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSYNEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDVGIPANNKGKHSIGCLFWLLARMVLQMRGIIRPGLKWDVMVDLFFYREPEEAKQQEEEEAPAAPEYAIQDFGAAGIAGFPTADGEWAVVTEQPWPEAVPQQPIAAAPADWAPDASAGDWEPVPAPQPSVPAPGAVGPTGWE* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g1349 307 CDD RPS2 26 192 IPR001865 GO:0003735|GO:0005840|GO:0006412
Amo07g1349 307 Hamap 40S ribosomal protein SA [rps-0]. 10 263 IPR027498 GO:0003735|GO:0006412|GO:0015935
Amo07g1349 307 SUPERFAMILY Ribosomal protein S2 18 208 IPR023591 -
Amo07g1349 307 Pfam Ribosomal protein S2 26 121 IPR001865 GO:0003735|GO:0005840|GO:0006412
Amo07g1349 307 ProSitePatterns Ribosomal protein S2 signature 1. 23 34 IPR018130 GO:0003735|GO:0005840|GO:0006412
Amo07g1349 307 PANTHER 40S RIBOSOMAL PROTEIN SA 12 299 IPR005707 GO:0003735|GO:0006412|GO:0015935
Amo07g1349 307 TIGRFAM uS2_euk_arch: ribosomal protein uS2 19 214 IPR005707 GO:0003735|GO:0006412|GO:0015935
Amo07g1349 307 ProSitePatterns Ribosomal protein S2 signature 2. 127 151 IPR018130 GO:0003735|GO:0005840|GO:0006412
Amo07g1349 307 PRINTS Ribosomal protein S2 signature 165 179 IPR001865 GO:0003735|GO:0005840|GO:0006412
Amo07g1349 307 PRINTS Ribosomal protein S2 signature 127 144 IPR001865 GO:0003735|GO:0005840|GO:0006412
Amo07g1349 307 PRINTS Ribosomal protein S2 signature 102 119 IPR001865 GO:0003735|GO:0005840|GO:0006412
Amo07g1349 307 PRINTS Ribosomal protein S2 signature 144 155 IPR001865 GO:0003735|GO:0005840|GO:0006412
Amo07g1349 307 PRINTS Ribosomal protein S2 signature 23 41 IPR001865 GO:0003735|GO:0005840|GO:0006412
Amo07g1349 307 PRINTS Ribosomal protein S2 signature 53 62 IPR001865 GO:0003735|GO:0005840|GO:0006412
Amo07g1349 307 MobiDBLite consensus disorder prediction 260 307 - -
Amo07g1349 307 PANTHER 40S RIBOSOMAL PROTEIN SA 12 299 - -
Amo07g1349 307 Gene3D - 22 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g1349 Amo-Chr7 35104775 35107042 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g1349 5 299 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 72.203 1.72e-150 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g1349 K02998 - gmx:100786575 457.988