Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g1339 ATGGCGGTTTCGTTCGCAGCAGTGAACCTTCGGACCATGGCACTCCGATCATCATCGAAGCTTCTCCGTCGTTCTTCCCATCTTCTCCCTCCTATTCACATGCAGCATTCAGCTCCTCCCCTCACTCGAAAGATAAGCATGGATGCTAGGAGCATCGCTTCCCAGCTTAACAGATCTGGTTTATTGAAAACTCAGGGTCTAATTGGAGGTAAATGGAGTGATTCCTACGATGGGAAAACCATACAGGTTTATAATCCAGCAACAGGTGAATCTATAGCGGATGTCGCGTGCATGGGCGGAAAAGAGACAAATGATGCGATTGCTTCAGCATATGATGCATATAGATCTTGGAGCAAAACCACTGCTGCTGAGAGAAGCAAACTTTTGAGGAAATGGTATGATTTACTAATGGCTCATAAAGAAGAGCTTGCTCAACTTATGACCTTGGAGCAAGGGAAGCCTCTTAAGGAGGCTATGGGTGAGGTAAACTATGGGGCTGGCTTTATTGAATTTTCAGCTGAGGAGGCTAAACGCATATATGGGGATATAATTCCTGCTCCTATGTCTGATCGACGGTTATTTGTTCTAAAGCAGCCTGTCGGGGTTGTAGGTGCAATCACACCATGGAACTTCCCTCTGGCTATGATCACACGGAAGGTTGGTCCAGCTCTTGCATGTGGATGTACAGTGGTCATAAAGCCCTCTGAACTTACACCTCTCACTGCATTAGCTGCAGCTGAACTTGCTATTCAAGCTGGAATACCTGCGGGTGCTGTGAATGTGGTTATGGGAAATGCTCCTGAAATTGGTGATGCTTTACTTGCAAGTCCTCAGGTACGCAAAATCACATTCACAGGCTCAACAGCTGTTGGAAAGAAATTGATGGCAGGTTCTGCTGAGACAGTAAAAAAAGTATCTCTGGAACTTGGTGGCAATGCACCGTGCATAATTTTTGATGATGCTGACATTGATATTGCAGTTAAAGGAACTCTTGCAGCAAAGTACCGCAATAGTGGACAAACATGTGTGTGTGCGAACAGAATTCTTGTGCAAGAAGGTATATATGATAAATTTGCAAAGGCTTTGATTGATGCTGTTCGGAATATGAAAGTTGGGGACGGTTTTGGTGAAGATGTGGTTCAGGGCCCTCTGATCAATGAAGCTGCAGTTAAAAAGGTTGAGACCTTGCTTCAAGATGCTACATCAAAGGGGGCAAAGGTAATGCTTGGGGGTAAAAGACATAGCCTTGGATTTACCTTTTATGAACCAACAGTTGTCGGTGATGTCAACAGTGATATGCGCATATCAAGAGAGGAAGTGTTTGGACCTGTTGCACCCCTTTTGAGGTTCAAAACCGAAGAGGATGCTATCCGGATTGCCAATGACACAAATGCAGGTTTGGGTTCATATGTGTTTACAAACAGTATCCAACGCTCATGGTGTGTTGCCGAGGCTCTCGAATATGGACTTGTTGGTATTAATGAAGGAGTAATCTCGACTGAGGTGGCACCATTTGGTGGTTTTAAACAGTCGGGCCTTGGAAGAGAAGGCTCAAAGTATGGGATGGATGAATATTTGGAGATCAAGTATGTGTGCCTGGGAAACATGAAGAAAGAATAA 1620 0.4469 MAVSFAAVNLRTMALRSSSKLLRRSSHLLPPIHMQHSAPPLTRKISMDARSIASQLNRSGLLKTQGLIGGKWSDSYDGKTIQVYNPATGESIADVACMGGKETNDAIASAYDAYRSWSKTTAAERSKLLRKWYDLLMAHKEELAQLMTLEQGKPLKEAMGEVNYGAGFIEFSAEEAKRIYGDIIPAPMSDRRLFVLKQPVGVVGAITPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAAELAIQAGIPAGAVNVVMGNAPEIGDALLASPQVRKITFTGSTAVGKKLMAGSAETVKKVSLELGGNAPCIIFDDADIDIAVKGTLAAKYRNSGQTCVCANRILVQEGIYDKFAKALIDAVRNMKVGDGFGEDVVQGPLINEAAVKKVETLLQDATSKGAKVMLGGKRHSLGFTFYEPTVVGDVNSDMRISREEVFGPVAPLLRFKTEEDAIRIANDTNAGLGSYVFTNSIQRSWCVAEALEYGLVGINEGVISTEVAPFGGFKQSGLGREGSKYGMDEYLEIKYVCLGNMKKE* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g1339 539 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 335 346 IPR016160 GO:0016491
Amo07g1339 539 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 307 314 IPR029510 GO:0016491
Amo07g1339 539 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 78 525 IPR016162 GO:0016491
Amo07g1339 539 CDD ALDH_F5_SSADH_GabD 83 533 - -
Amo07g1339 539 Pfam Aldehyde dehydrogenase family 72 531 IPR015590 GO:0016491
Amo07g1339 539 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 311 500 IPR016163 GO:0016620
Amo07g1339 539 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 59 536 - -
Amo07g1339 539 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 59 536 - -
Amo07g1339 539 SUPERFAMILY ALDH-like 61 536 IPR016161 GO:0016491
Amo07g1339 539 TIGRFAM SSADH: succinate-semialdehyde dehydrogenase 83 529 IPR010102 GO:0009013|GO:0009450
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g1339 Amo-Chr7 34604376 34616294 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g1339 43 539 Aldehyde Dehydrogenase Gene Family AT1G79440 79.678 0.0 814
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g1339 K17761 - gmx:100808318 912.524