Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g1334 ATGGTGATTTCTTCCTTTGTATTTGTTTCTCCTCGTCTGCTGGACTCATATTTTCTTCTTGTGCTTCTTCGAGACCCAAATCCAATCCACCAAATGGATCAGAAATTTGATTCTGTGAAAGACCTTTCTCTCATTTCAGAGAAGAACTGGTGCATTAAAGTAAGAATTTTGAGGATGTGGAAGGTTCCGTCATATGAAAAGAGCTACTCGCAACCTTTAATGGAGTTGGTTGTCATTGACAAAGATGGAACTCRGATCCATTGTTTCATCCGGTCTGTCCATTACCGGCTTTTTGAACCTATCCTTGAGGAGGGAAAGGTGTTTGTTGTGGGCAACTTCGCAATGGACTCAAAYACACAGAAATACAGACCCACCAAGCWTAGCATGCGGATCATATTTAAGAGGGACACATTGGTGTCTGGTGCTGATGACATGGATATTCCAATTGAGTCATTTGATTTCGTGGCAACCAAGGAAATCTTATCATCCGTTAAGGATGACTTATATCTTATTGATTTTGTTGGTCTAYTGTCCGCAAAGAGTGAGTTGATTCCTTTTGAATATAGGAATCGGAAGTCACATTACATGAAAATCGAGCTTGATGATCTGAGTGAGAAGCTTTCATGCACCTTGTGGGAAAATTATGCCTCTGAATTGATAACTCTTCTTGATGCGAACAAGGCCACTGAATTTATAATTGTGCTCCAATTTGCCAAGATGAAGTTCTACAATGGTGTTATGACTATAACCAACACAAACTACACCAYAAGGCTCAYGGTTAATSCTRATCTTGAAGTGGTTAAGAAATTCYGTCAAAAGCTGATTYGACTTGGTAGCAAGCACAGCACCAGCGTTGAAGTTATTGGCCGGGTWGTGAGGCATTCTCCATCTGAAGATTTTCTCAGCCTTACCCCTTATGCTACCATACATCAAATAAAGGAAACTCTTGAGAAATCAACCTTCGTCACATGTGGAACGGTAATCGACATTGACAGGGATCATGCATGGTGGTACAAGGCTTGCAGGCAATGCACACARGGACTGGAGGCACTTACTGACCAATTTTATTGTGCAAAGTGCGATGTTTACTCTACAGTTTTTGCCCCCAGGTTCTGCATTCAGGTTCGTGTTGGTGATGAGTCAGATACCGCAACTTTTGTTCTATTTGAGAATTGTGCGTCAAAGTTCTTAGGTCTAACTGCCGCTGAGATCCGCACCARACTGCTTGCTAGGGGATATGGAAGAGACCATTTCCCAGATGAGCTTAATRCACTGATTGGGAGGACACTTCTGTTCAAGCTTACTGTTAGGCATGATAGCTTAAATAAATTTCAGCCRTGCGTGATTACCGTTTCAAGGATATGTTCTGACCCAGACATTATCTCCTCACTTGCTTTAGAAAAGAACATTAAATTGGTGTGTGTCGTTGAGTGCTCCACAGAGGACTTTCAATTACCATTGCTTATTCAAATCAGTGACTTGGTTGGGTCTGAGAGCATACTCGGCGTCCCTGGATCCACCACCACTCCGAGTCCCAATTCTGATGCAGTTTCTGGTCACGGGGCTGCCCACGTGGTTACACATACTCCTGTTAAGCGGGTTTGCATTAGATCCGGCGGCGACTTCTCATCCCGTGCCACACCCTCTGCCTCCAAGAGTCTCCTCCCTGCCTTTGAGAGCTGCGTCCTAGGGAATGTCACCAACCCTGATGCAGGGGACATATGA 1725 0.4336 MVISSFVFVSPRLLDSYFLLVLLRDPNPIHQMDQKFDSVKDLSLISEKNWCIKVRILRMWKVPSYEKSYSQPLMELVVIDKDGTXIHCFIRSVHYRLFEPILEEGKVFVVGNFAMDSNTQKYRPTKXSMRIIFKRDTLVSGADDMDIPIESFDFVATKEILSSVKDDLYLIDFVGLLSAKSELIPFEYRNRKSHYMKIELDDLSEKLSCTLWENYASELITLLDANKATEFIIVLQFAKMKFYNGVMTITNTNYTXRLXVNXXLEVVKKFXQKLIXLGSKHSTSVEVIGRVVRHSPSEDFLSLTPYATIHQIKETLEKSTFVTCGTVIDIDRDHAWWYKACRQCTQGLEALTDQFYCAKCDVYSTVFAPRFCIQVRVGDESDTATFVLFENCASKFLGLTAAEIRTXLLARGYGRDHFPDELNXLIGRTLLFKLTVRHDSLNKFQPCVITVSRICSDPDIISSLALEKNIKLVCVVECSTEDFQLPLLIQISDLVGSESILGVPGSTTTPSPNSDAVSGHGAAHVVTHTPVKRVCIRSGGDFSSRATPSASKSLLPAFESCVLGNVTNPDAGDI* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g1334 574 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 51 399 - -
Amo07g1334 574 SUPERFAMILY Nucleic acid-binding proteins 35 144 IPR012340 -
Amo07g1334 574 CDD RPA1_DBD_A_like 51 139 - -
Amo07g1334 574 CDD RPA1_DBD_C 309 442 IPR013955 -
Amo07g1334 574 Gene3D - 145 285 IPR012340 -
Amo07g1334 574 Gene3D - 34 141 IPR012340 -
Amo07g1334 574 SUPERFAMILY Nucleic acid-binding proteins 304 455 IPR012340 -
Amo07g1334 574 Pfam Replication factor-A C terminal domain 323 454 IPR013955 -
Amo07g1334 574 Gene3D - 301 463 IPR012340 -
Amo07g1334 574 PANTHER REPLICATION FACTOR A 1, RFA1 51 399 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo07g1334 574 SUPERFAMILY Nucleic acid-binding proteins 152 265 IPR012340 -
Amo07g1334 574 Pfam Domain of unknown function DUF223 75 157 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g1334 Amo-Chr7 34527855 34530751 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g1334 47 451 Core DNA Replication Machinery Family AT5G08020 21.678 2.33e-17 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g1334 - - adu:107458794 1060.06