Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g1287 ATGACTATACCATCGGCACCGCCGCCCTTTGCCCTAACTGTGCTCTGCGCCGGCTGCAGCACGCCACTGACCACGTCGATGAACGTCGTGGAGTTTGTTTGCCCTGCTTGCCAAATGCCGCAGCGGTTGCCGCCGATGCCATTACCACCACTTCCACCACCATCAGTATCACCGCCACAATCGCAACCACCAGTGCCGCCGGCTGGAGCGGCTGCGAAGAAGCGGAAACACGCCACGGAGACTAGCAAGCTACGCAAGAAGCAGAATGGCGGCTCTGGTTCAAGTAAGGTTGAGGTTCCATGCAGAGGCTGCAAAGGGGTTTTTTCCGTTCCAGCTAGTCTCACGAAGTTCGCTTGCCCTAAGTGTGGTGTTGAGAACCCCGTCGAGACCGAAGAAATCAACGAGCTAGCGGTTGAGGTTGAACGTGATGAAGATGAAGGCGGAACAGCAGGAGAAACATTTACAGATTATCGGCCAGCAAAAGTATCTATGGGACCTCCGCACCCAGATCCTGTTGTTGAGACTTCTTCCTTGTCTGCAGTGCAGCCACCTGAACCTACTTATGATCCAATACTTAAAGATTATTTGGAAAGTTCAAAGGCTTTGTCATGCCTGCAGATAGAGACATTGGTCTATGCTTGTCAGAGGCATCTTCTACACCTTCCAGACGGCACAAGGGCAGGATTTTTTATTGGGGATGGAGCTGGTGTTGGTAAGGGCCGCTCAGTTGCTGGGCTTATTTGGGAGAACTGGCAGCAAGGACGGGAAAAGGCGTTATGGATTTCTGTTGGTTCAGACTTGAAGTTTGATGCCAGAAGAGACTTGGATGATATGGGTGCAACTTGTGTTAAAGTGCATGCTTTGAACAAACTGCCTTATTCTAAGCTTTCTTCGAAGTCTGTTGGAGTCAAGGATGGGGTTGTTTTCTCAACTTACAGTAGCCTCATAGCATCCTCTGATAAGGGTCAATCTCGTCTCAAACAACTTGTGCAGTGGTGTGGGCCAAAGTTTGATGGTCTTATAATATTCGATGAGTGTCACAAAGCGAAAAACTTGATGCCGGAAGCTAAAGGTGGTATGCAGCCAACACAAACTGGCAAAGCAGTGCTTGATATACAGTCTCAACTACCCGAAGCTCGTGTTGTTTATTGTTCTGCCACTGGTGCATCTGAACCTCGCAACATGGCTTATATGGTTCGACTTGGCCTTTGGGGTGATGGAACTTCTTTCTGTGATTTCAAGGAATTTTTAGGTGCACTTGACAAAGGGGGTGTAGGAGCTCTAGAACTAGTTGCCATGGACATGAAAGCAAGGGGAATGTATTTATGTCGGACCCTTAGCTACAAGGGTGCTGACTTTGAAGTTATTGAAGCACCATTAGAGGATAAGATGATGGACATATATGAAAAAGCTGCAAAATTTTGGTCGGAACTGCGCGTGGATTTACTGTCTACAACTTCCAATGCCTTCTTAAATGTGAAATTTGATTCACGTACACTGTGGAGATTATACTGGTCATGCCACCAGCGTTTCTTTAGACACGTGTGTTTGTCTGCTAAAGTACCTGCTACTGTGAGACTAGTGAAGCAAGCATTGATGGAAGATAAGTGTGTAGTTATAGGACTGCAGAGTACTGGGGAAGCCAGGACTGAAGGAGCTGTGGCAAAATACGATGCATTGCTTGATCTCGAGGGGATGGGGCACTCAACGAGTCCTTGTGTATCAGGAAAAGTAAAGGGCAGGAACATAGCTAAGGTGCATCCTTCTAGTAATATTGAAAGTTACGAAGAATCTGAAACTGACACTGATCCTGAAATGGATGAATCTGATTATGAACCAGAAGGTGAAGAGAGTGCTGCCTCTGCTCTTGAATCTAGTGACTCTGATTATGATGAGCTTCAGACATGTGAATTATGCAGCTTAGAGGAGGAAAGGCATAATTTGCTTTCATGCTCCGGCTGTGGTAAACTGGTCCATCAAGAATGCTTAAGTCCCCCAATTCACAATTTAACTCCAGAAAAATGGTTATGCACTGTGTGCAAAGGAAGAACAAATGACATCCAACCAGGTCCTGACTACCTAACTGAACTCAAGAAGAGGTTTGGCACATGTTTTAACGAATTCTGCAACTGTGGTTTTAATGATCTTCCGATCAATCCCTTGGATGATATTATTGATCAGTTAGGAGGCACTGAAAAAGTTGCTGAAATCACAGGAAGAAAAGGCAGGCTTGTGAGGGCCCCTTCGGGAAAGGGTGTAATTTACGAGCCTCGTAACAAAAAAGATATCAGTATGGAGATGGTAAACATGCATGAAAAGAAGCTTTTTTTGGATGCTAATAAGTTTGTAGCTATTATATCTGAAGCCGGATCTGCGGGTTTTTCATTGCATGCAGATAGAAGGGTTATTAATCAGAAAAGAAGGGTTCATATAACTTTAGAACTTCCTTGGAGTGCTGACAAAGCAATTCAGCAGTTTGGAAGAACTCATCGATCAAATCAAGCTTCAGCTCCAGAATACAGGGTACTCTTTAGTAACCTTGGTGGTGAACGAAGCTTTGCATCTGTTGTTGCTAAAAGATTAGAATCTCTTGGTGCTTTGACTCAGGGGGATCGCAGGGCTGGACCTTCATTAAGTGCTTACAATTATGATAGTAGTTATGGAAAGAGGGCTCTAATGATTATGTACGAAGGAATATTGGAACAGGATTCTCTTCCTGTTGTTCCTCCTGGATGTTTATCTGACAATCCTGTTACAATCAATGAATTTATTATGGAAGCAAAATCTGCTCTTCTATCTGTTGGAATAGTTAAAGGATATGAGGAACATTCTGGAAGTTTATCTGGCTACATTAGTGATAATGATATGCAAGATGTTCGGCGATTCCTCAATCGGCTTCTAGGACTTCCTCCTGATATTCAGAATAGGCTTTTTGAATTATTTGCGAGCATATTTGATCATCTCATTCAGAATGCTCGCATTGAAGGTAACCTTGATACAGGCATTGTGGATATGAAGGCTAATGTTGTAGAACTACAAGGGACTCCAAAGACAGTTTATATTGATCCAGTGATGGGGGCTTCAACGGTTCTGTTCACTTTCATCTTGGATAGGGGGACCACATGGCAGCTGGCAACCTCCATGCTGAATGAGAAGCAGAAGGGTGGGCTTGGATCAGTCAATGATGGTTTCTACGAGTCTAAGAGGGAGTGGTTAGGAAGGCGTCATTTCATTTTAGCATTTGAAAGTTCTGTTTCGAATATGTATAAGATAGTTCGCCCTACTGTTGGAGAATCCTTTCGGGACATGCATCTGTCAGAATTAAAAAGGAAATATAAAAAAGTTTCATGTTTAAAGAATGCTCAAAAAGGATGGGAAGTGGAATATAATGTTTCATCTAAACAGTGCATGCACGGTCCCAAATGTAAGCTTGGCAACTTCTGTACTGTTGGCCGAAGTCGGCAGGAAGTAAATATCTTGGGTGGTGCTATTCTTCCTCTTTGGCGAGCTATTGAGAAGGCCCTTTCTTTGCAGTTTCGCCGAAACCATAGGAGGCTACGTGTTGTTCGCATTGAGACTTCTGCTGATAACCAGCATATAGTTGGCGTTCTTGTTCCTAATGCAGCTGTTAAATCCGTCCTTCAAGGTTTGGAATGGGTTCCAGCTGATGATAATTGA 3678 0.4421 MTIPSAPPPFALTVLCAGCSTPLTTSMNVVEFVCPACQMPQRLPPMPLPPLPPPSVSPPQSQPPVPPAGAAAKKRKHATETSKLRKKQNGGSGSSKVEVPCRGCKGVFSVPASLTKFACPKCGVENPVETEEINELAVEVERDEDEGGTAGETFTDYRPAKVSMGPPHPDPVVETSSLSAVQPPEPTYDPILKDYLESSKALSCLQIETLVYACQRHLLHLPDGTRAGFFIGDGAGVGKGRSVAGLIWENWQQGREKALWISVGSDLKFDARRDLDDMGATCVKVHALNKLPYSKLSSKSVGVKDGVVFSTYSSLIASSDKGQSRLKQLVQWCGPKFDGLIIFDECHKAKNLMPEAKGGMQPTQTGKAVLDIQSQLPEARVVYCSATGASEPRNMAYMVRLGLWGDGTSFCDFKEFLGALDKGGVGALELVAMDMKARGMYLCRTLSYKGADFEVIEAPLEDKMMDIYEKAAKFWSELRVDLLSTTSNAFLNVKFDSRTLWRLYWSCHQRFFRHVCLSAKVPATVRLVKQALMEDKCVVIGLQSTGEARTEGAVAKYDALLDLEGMGHSTSPCVSGKVKGRNIAKVHPSSNIESYEESETDTDPEMDESDYEPEGEESAASALESSDSDYDELQTCELCSLEEERHNLLSCSGCGKLVHQECLSPPIHNLTPEKWLCTVCKGRTNDIQPGPDYLTELKKRFGTCFNEFCNCGFNDLPINPLDDIIDQLGGTEKVAEITGRKGRLVRAPSGKGVIYEPRNKKDISMEMVNMHEKKLFLDANKFVAIISEAGSAGFSLHADRRVINQKRRVHITLELPWSADKAIQQFGRTHRSNQASAPEYRVLFSNLGGERSFASVVAKRLESLGALTQGDRRAGPSLSAYNYDSSYGKRALMIMYEGILEQDSLPVVPPGCLSDNPVTINEFIMEAKSALLSVGIVKGYEEHSGSLSGYISDNDMQDVRRFLNRLLGLPPDIQNRLFELFASIFDHLIQNARIEGNLDTGIVDMKANVVELQGTPKTVYIDPVMGASTVLFTFILDRGTTWQLATSMLNEKQKGGLGSVNDGFYESKREWLGRRHFILAFESSVSNMYKIVRPTVGESFRDMHLSELKRKYKKVSCLKNAQKGWEVEYNVSSKQCMHGPKCKLGNFCTVGRSRQEVNILGGAILPLWRAIEKALSLQFRRNHRRLRVVRIETSADNQHIVGVLVPNAAVKSVLQGLEWVPADDN* 1226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g1287 1225 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 412 IPR027417 -
Amo07g1287 1225 Gene3D - 196 400 IPR027417 -
Amo07g1287 1225 ProSitePatterns Zinc finger PHD-type signature. 636 680 IPR019786 -
Amo07g1287 1225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 619 700 IPR013083 -
Amo07g1287 1225 PANTHER STRAWBERRY NOTCH-RELATED 129 1221 IPR026741 GO:0006355
Amo07g1287 1225 MobiDBLite consensus disorder prediction 588 629 - -
Amo07g1287 1225 MobiDBLite consensus disorder prediction 596 617 - -
Amo07g1287 1225 PANTHER OS08G0223700 PROTEIN 129 1221 - -
Amo07g1287 1225 PANTHER STRAWBERRY NOTCH-RELATED 9 131 IPR026741 GO:0006355
Amo07g1287 1225 Pfam C-terminal domain on Strawberry notch homologue 719 1004 IPR026937 -
Amo07g1287 1225 SMART PHD_3 635 681 IPR001965 -
Amo07g1287 1225 MobiDBLite consensus disorder prediction 140 162 - -
Amo07g1287 1225 MobiDBLite consensus disorder prediction 48 97 - -
Amo07g1287 1225 PANTHER OS08G0223700 PROTEIN 9 131 - -
Amo07g1287 1225 SUPERFAMILY FYVE/PHD zinc finger 624 683 IPR011011 -
Amo07g1287 1225 MobiDBLite consensus disorder prediction 48 66 - -
Amo07g1287 1225 ProSiteProfiles Zinc finger PHD-type profile. 633 683 IPR019787 -
Amo07g1287 1225 Pfam P-loop containing NTP hydrolase pore-1 167 469 IPR039187 -
Amo07g1287 1225 Pfam PHD-finger 636 681 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g1287 Amo-Chr7 33134811 33155896 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Amo07g1287 AAA_34 2.6e-131 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g1287 - - ahf:112702977 2271.89