Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g1186 ATGGCTACTTCATTCAACATGATTAAGGATCTTGATATTGCTGTTGCTAATCAAGTTTGGCGTATCAAAGTGCGTGTCATCAAAATATGGTCTATTAATTTAGGCGAAGAGAAGTTCAGGAGACCTAACTTAGAGATGGTTGTTATGGATGAATTAGGTGATCGGATACAATGTTCTGTAAGGAATCCTTTGAGGAGATTATTTGAGCAGGAGTTAGTTGAGGGCAATGTGTACTCTGTTGCTAACTTCTCTATTGAACTTAATGATCAAAAGTACAAGCCAACCAATCATACTCTGCGTGTGTTCTTTAAAAGGGAATCTCAAATTCGTGTGTTAGTCGATATTAATTTCCCAAACAATATTTTTCACTTTGTGCCTAATGAAATGATACTTAATCATGATAATCCTCAGTCTCACTTGATAGATGTTATTGGGTTGTTGACTGGAAAGGGTGATATAATAGAGTTCAGTAAGAATGGAAAGAAGTCCATATACATGGTTATTGAGCTTGATGACATGCAATCTAAGGGTAAGATAAGGTGTACATTGTGGGAGGAGTTTGCTACTCAACTGGTGAAGCACATGGAGCAGTACCCTAATACTGAGTTCATTATTATTGTGCAGTTTGCCAAATTTAACCTGTTCAAGGGAACCATGGGCATATCTAATACAAACTACAACTCTACCTTATACATTAACGCTGATCTTAAAGAAGTTAAGGAATTTAGACAAAGGTTTATCATGGGTAATGACAAGCCATCTAACCAGCTTTCTCAAATTGCATCTGATTCATTGATTTCCCTTGAGCAAGATCTTATTAACCATACTCCTTACAAGTCTATAAGCGAACTTAAGGAGAGCACTGAGGGTGGAATATTTGTTACCATTGGAACTGTGATTTCTATTGACACTAGACTAGGTTGGTGGTACAAAGGGTGCAAGATGTGTTTTCATTCACTTAAAGAAGATGAGAATTCATATTATTGCCATGAATGTGATATTTATCCTAATACTCATGTTCCTCGTTTCTGCATTCAAATGAGAGTATCAGATGAGACAGACTCTGCTTCATTTATTGTTTATGACAAGGAAGCCTCCAAATTTCTTGAGATATCTGCTTCTGAGCTTCGTTTGAGACAGATATCAAAGGGTTGCGGCAAGGATGAATTTCCCGTTGAGATTAATTCATTTAGGGGTAAGAAGTTTCTATTCAAGATTTCTGTGAAGCTTGATGATATCAATGCTTTCCAGCCATGCAAGATTACTGTTTTGAAGTTGACTGAAGATCCAAATCTGCTCACTTCTTTTTCTTCCAAGTACAAGACATTTGATAACACCCCAATCGAAAATACTGAGTTGCAGAGTTTGCAAACTGATTCTACTGATAATTCTAAGAGGTATGATAGTGGTGTAACGGCAAAAAATTTGCTGGACATTTTCCCGGATAATGCCACTACTTCATCATCCAAATGCCGGAAGCTCTCCAAGGAGTCTGATTGTAGCTTTGTCAAAGAGCATGTTGATTAA 1527 0.3707 MATSFNMIKDLDIAVANQVWRIKVRVIKIWSINLGEEKFRRPNLEMVVMDELGDRIQCSVRNPLRRLFEQELVEGNVYSVANFSIELNDQKYKPTNHTLRVFFKRESQIRVLVDINFPNNIFHFVPNEMILNHDNPQSHLIDVIGLLTGKGDIIEFSKNGKKSIYMVIELDDMQSKGKIRCTLWEEFATQLVKHMEQYPNTEFIIIVQFAKFNLFKGTMGISNTNYNSTLYINADLKEVKEFRQRFIMGNDKPSNQLSQIASDSLISLEQDLINHTPYKSISELKESTEGGIFVTIGTVISIDTRLGWWYKGCKMCFHSLKEDENSYYCHECDIYPNTHVPRFCIQMRVSDETDSASFIVYDKEASKFLEISASELRLRQISKGCGKDEFPVEINSFRGKKFLFKISVKLDDINAFQPCKITVLKLTEDPNLLTSFSSKYKTFDNTPIENTELQSLQTDSTDNSKRYDSGVTAKNLLDIFPDNATTSSSKCRKLSKESDCSFVKEHVD* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g1186 508 CDD RPA1_DBD_B_like 142 247 - -
Amo07g1186 508 SUPERFAMILY Nucleic acid-binding proteins 4 116 IPR012340 -
Amo07g1186 508 Gene3D - 7 114 IPR012340 -
Amo07g1186 508 Gene3D - 269 435 IPR012340 -
Amo07g1186 508 PANTHER BNAC01G35430D PROTEIN 23 446 - -
Amo07g1186 508 CDD RPA1_DBD_C 281 435 IPR013955 -
Amo07g1186 508 SUPERFAMILY Nucleic acid-binding proteins 276 429 IPR012340 -
Amo07g1186 508 SUPERFAMILY Nucleic acid-binding proteins 136 246 IPR012340 -
Amo07g1186 508 CDD RPA1_DBD_A_like 21 109 - -
Amo07g1186 508 Pfam Domain of unknown function DUF223 45 132 IPR003871 -
Amo07g1186 508 PANTHER REPLICATION FACTOR A 1, RFA1 23 446 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo07g1186 508 Pfam Replication factor-A C terminal domain 294 427 IPR013955 -
Amo07g1186 508 Gene3D - 115 256 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g1186 Amo-Chr7 26483934 26486491 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g1186 20 423 Core DNA Replication Machinery Family AT5G08020 23.810 3.83e-19 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g1186 - - adu:107490971 982.63